Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25270 229 / 4e-72 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G68170 200 / 9e-61 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G13670 192 / 1e-57 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 190 / 1e-56 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G08290 182 / 1e-53 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G09380 182 / 1e-53 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G30340 173 / 2e-50 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G64700 173 / 2e-50 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G01440 170 / 3e-49 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G56620 169 / 8e-49 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020819 [exp] 699 / 0 AT1G25270 262 / 6e-85 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10020817 [exp] 465 / 2e-164 AT1G25270 274 / 8e-90 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10020987 [exp] 309 / 2e-102 AT1G25270 301 / 8e-100 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10012693 [exp] 284 / 9e-90 AT1G25270 141 / 7e-37 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10041634 [exp] 201 / 3e-60 AT5G07050 557 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10031437 [exp] 194 / 6e-58 AT1G09380 438 / 8e-154 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 190 / 2e-56 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026113 [exp] 190 / 2e-56 AT5G07050 537 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008708 [exp] 189 / 5e-56 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G108600 [exp] 299 / 5e-99 AT1G25270 293 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G307900 [exp] 226 / 3e-71 AT1G25270 254 / 2e-82 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.016G031400 [exp] 197 / 4e-59 AT5G07050 504 / 4e-179 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.006G033500 [exp] 196 / 1e-58 AT5G07050 474 / 5e-167 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.003G192500 [exp] 191 / 8e-57 AT5G07050 546 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.019G004100 [exp] 184 / 1e-54 AT5G64700 339 / 3e-115 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G165600 [exp] 183 / 4e-54 AT5G07050 281 / 4e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G032500 [exp] 181 / 3e-53 AT5G07050 530 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G307800 [exp] 179 / 1e-52 AT5G64700 293 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.011G149000 [exp] 179 / 1e-52 AT3G30340 369 / 7e-127 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10012691 pacid=23148189 polypeptide=Lus10012691 locus=Lus10012691.g ID=Lus10012691.BGIv1.0 annot-version=v1.0 ATGGAAAACCTTGGAGGTTTCCTGCATGGATTAGGGCCACTCATGATCATGATTGTGATTCAAGCTGCATACACAGTGATGATTATTCTGTACAAACTAG CTTTGAATGATGGGATGAACCTCAGAATCTTCATTGCTTACAGGCTCATCTTTGCTACTGCCTTCATCACCCCACTTGCTATACTCCTTGAAAGGAAGAA ATGGCCAAAGTTCACATGGAAGCTCCTCTTCCAAGCTTTCGTTTTTGGACTTTTCGGGGCATCACTACAGCAAACTCTATATGCAGAAAGTTTGGCCTTG ACTTCTCCAACATATGCTACTGCCATAACCAACCTGGCTCCTGCTATTACCTTGTCATTGGCCGTTTTATGCAGGTCAGAGAGGTTGCGGCTAAAGACCA GAGTAGGACAGGCAAAAGCAGCCGGAACATTGATCGGAGTCGCTGGTGCGACCGTGATGACTTTCTATAAAGGGGTAGAGTTGAAGGGTTTGTCAACAAA CTTTCAACTGCTGAGATTAAACCATCAACATCACAACGAACACCAGACAGCCATCAGCAACGTCCTGGGTTTGCTTACTGGATTGGGAAGTTGCATCTCT TATGCAATCTGGTTAATAATGCAGAGTCGAGTAGGCGAGAAATACCCATCGAACTGCCATTACACAACCACAGCTCTTATGACGTTCATGGCCTCGATTC AGACGGTTGCTTATTGCCTGTGGGCGGAAAGGGATTTGAGCCAGTGGAGGCTCGGATGGAATGTCAGACTTCTCGGATCCGCTTTCTCGGGGATTGCTGC TTCTGGACTGGCGATGATAGCCATCGTTCAGATTGTCGAGATAAGAGGCCCCGTGTTCATATCTGCTTTCAACCCTCTGTCCCTCGTGTTTGTGGCCATC ATAAGCTGTTTGATGCTCGGTGAAGTGTTGCATCTGGGAAGCCTACTCGGAGGAATCCTGATCGTGTGCGGATTGTACTTGGTGCTTTGGGGTAAAATCA AAGAGTTCGAACCGAAGCCAGATGGATTGGAGAAGGAAACCAGACTAGTTATAACCGTTGATGCCAAGTTAACTTCACCTGGTGCTGGCTCAATATCTCT GCCGGTTCCAAACTCGACACCATCCGAAAATCGGAAAAGGGAAGACCAAACTAGAGTGGTGTAA
AA sequence Show only first row Show all	>Lus10012691 pacid=23148189 polypeptide=Lus10012691 locus=Lus10012691.g ID=Lus10012691.BGIv1.0 annot-version=v1.0 MENLGGFLHGLGPLMIMIVIQAAYTVMIILYKLALNDGMNLRIFIAYRLIFATAFITPLAILLERKKWPKFTWKLLFQAFVFGLFGASLQQTLYAESLAL TSPTYATAITNLAPAITLSLAVLCRSERLRLKTRVGQAKAAGTLIGVAGATVMTFYKGVELKGLSTNFQLLRLNHQHHNEHQTAISNVLGLLTGLGSCIS YAIWLIMQSRVGEKYPSNCHYTTTALMTFMASIQTVAYCLWAERDLSQWRLGWNVRLLGSAFSGIAASGLAMIAIVQIVEIRGPVFISAFNPLSLVFVAI ISCLMLGEVLHLGSLLGGILIVCGLYLVLWGKIKEFEPKPDGLEKETRLVITVDAKLTSPGAGSISLPVPNSTPSENRKREDQTRVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10012691 [exp]	0	1
AT3G22060			Receptor-like protein kinase-r...		Lus10022286 [exp]	2.8	0.8351
					Lus10033730 [exp]	3.9	0.8574
AT1G63060			unknown protein		Lus10001796 [exp]	4.2	0.8244
AT1G63060			unknown protein		Lus10002567 [exp]	4.9	0.8244
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10001886 [exp]	8.5	0.7664
					Lus10041320 [exp]	8.9	0.7947
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Lus10018523 [exp]	9.8	0.7492
					Lus10005748 [exp]	10.9	0.7591
AT1G76520			Auxin efflux carrier family pr...		Lus10025166 [exp]	11.5	0.6883
AT5G45340		CYP707A3	"cytochrome P450, family 707, ...		Lus10034768 [exp]	17.9	0.7336

Compare expression of checked genes

Lus10012691 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.