Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60990 495 / 5e-175 Glycine cleavage T-protein family (.1.2.3) AT1G11860 46 / 3e-05 Glycine cleavage T-protein family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020818 [exp] 515 / 0 AT1G60990 358 / 2e-121 Glycine cleavage T-protein family (.1.2.3) Lus10001441 [exp] 51 / 1e-06 AT1G11860 709 / 0.0 Glycine cleavage T-protein family (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G009600 [exp] 56 / 3e-08 AT1G11860 735 / 0.0 Glycine cleavage T-protein family (.1.2.3) Potri.011G006800 [exp] 50 / 3e-06 AT1G11860 734 / 0.0 Glycine cleavage T-protein family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0289 [flax] [poplar] FBD PF01571 [flax] [poplar] GCV_T Aminomethyltransferase folate-binding domain
Representative CDS sequence Show only first row Show all	>Lus10012692 pacid=23148191 polypeptide=Lus10012692 locus=Lus10012692.g ID=Lus10012692.BGIv1.0 annot-version=v1.0 ATGTTGTCCGCACTGTTGACCGCACCGGCAGCAGCTCCGCCGTGGAGAAGGCTGAGCGGCGATTCGGCTGCGGCGGCCGTTGTTGCTACTCCTTTGCAAC CCTCCCTTATTTCCTTCAACCCTCTGTCCTCTTCGTTCAGAAGCTCTTCTTCTCTTGTAGCAGCAGCAGCAGCTTCTTCGTCTTATGACCTCACGCCTCC TCCAATCGATCATGATCTTCTCGAGGAATTGGAAGGGCGTGCTGAGGCAAAAGTTTCAGAAGATGGGATTATTGAAACATTTGGCAATGATGATGATGCG TTGGATGCCTTTTACAATGGTGTAGTGGTATCAGATCTTTCACACTTCGGACGGATAAGAGTGAGTGGAGATGATCGAATTCAGTTCCTCCACAATCAAA GTACTGCAGATTTTGATATTCTTCTAGAGGGACAGGGATGTGATACTGTATTTGTTACACCAACAGCACGGACAATTGATATCGCACATGCCTGGAATAT GAAAAATTCGGTTTTGTTAATGGTCTCTCCTCAGACTAGTAGCAGTATAACTCAGATGTTGAACAAATACATATTTTTTGCTGACAAAGTGGAAGTTGAA GACATCACAAAGAAAACTAGCTTATTTACTTTAGCAGGGCCACAAAGCAACGAGGTAATGAACAGCCTGAATGTTGGCGATCTTGTGGGGCAGCCTTATG GCACAAATCGTCATTATGCTGTCAATGGGATGCCGCTTACCATAGGGGTTGGGAGTATCATGTCTGAAGAAGGATATACGTTGTTAATGTCCCCTGCTGC TGCTGGAACTGTCTGGAAATCCATTTTATCACATGGTGCCCTTCCCATGGGTTCCAATGCCTGGGAACGACTAAGAGTTCTGGAAGGTAGACCTGCCCCA GGTAAGGAGCTTACGAATGAATTCAATGTCTTGGAGGCTGGTCTCTGGAATTCCATCTCTCTAAACAAAGGATGCTATAAAGGACAAGAAACCATCGCTC GACTCGTAACATATGATGGTGTGAAGCAGAGACCATCATCACTTGTGATGGGAAAAAGACTGACGAGCTATACATATGGAACTGGAAGAGCAGGATCCAA TGAACATTATGGATTAGGCTACATTAAGAAGCAGGAGGGGTCCAAGGGGAAGACTGTCGCTATCGGGGAGGACACTATCGGAACATTGGTCGAAGCTCGA TTTCTTTCTCGGCAGTGTCCTCCATCAAAGAGCTCGAGCTCCTAA
AA sequence Show only first row Show all	>Lus10012692 pacid=23148191 polypeptide=Lus10012692 locus=Lus10012692.g ID=Lus10012692.BGIv1.0 annot-version=v1.0 MLSALLTAPAAAPPWRRLSGDSAAAAVVATPLQPSLISFNPLSSSFRSSSSLVAAAAASSSYDLTPPPIDHDLLEELEGRAEAKVSEDGIIETFGNDDDA LDAFYNGVVVSDLSHFGRIRVSGDDRIQFLHNQSTADFDILLEGQGCDTVFVTPTARTIDIAHAWNMKNSVLLMVSPQTSSSITQMLNKYIFFADKVEVE DITKKTSLFTLAGPQSNEVMNSLNVGDLVGQPYGTNRHYAVNGMPLTIGVGSIMSEEGYTLLMSPAAAGTVWKSILSHGALPMGSNAWERLRVLEGRPAP GKELTNEFNVLEAGLWNSISLNKGCYKGQETIARLVTYDGVKQRPSSLVMGKRLTSYTYGTGRAGSNEHYGLGYIKKQEGSKGKTVAIGEDTIGTLVEAR FLSRQCPPSKSSSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G60990			Glycine cleavage T-protein fam...		Lus10012692 [exp]	0	1
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Lus10033291 [exp]	2.0	0.8452
AT1G01710			Acyl-CoA thioesterase family p...		Lus10037853 [exp]	3.9	0.8359
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Lus10002534 [exp]	4.2	0.8438
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Lus10039618 [exp]	5.1	0.8156
AT4G01690		PPOX, HEMG1, PP...	Flavin containing amine oxidor...		Lus10010082 [exp]	5.6	0.8578
AT1G55535			unknown protein		Lus10021858 [exp]	9.5	0.8214
AT5G59350			unknown protein		Lus10040839 [exp]	10.4	0.7563
AT1G22790			unknown protein		Lus10028691 [exp]	15.0	0.8012
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Lus10009770 [exp]	15.5	0.8101
AT2G33700			Protein phosphatase 2C family ...		Lus10016030 [exp]	17.3	0.8165

Compare expression of checked genes

Lus10012692 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.