Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68170 139 / 4e-36 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G25270 138 / 1e-35 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G28580 135 / 2e-34 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G28570 131 / 4e-33 SGNH hydrolase-type esterase superfamily protein (.1.2) AT1G28610 127 / 8e-32 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT3G26430 125 / 4e-31 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G28590 124 / 2e-30 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G45910 121 / 7e-30 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G48460 121 / 1e-29 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G14450 121 / 1e-29 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020817 [exp] 443 / 1e-151 AT1G25270 274 / 8e-90 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10002389 [exp] 397 / 1e-133 AT3G48460 145 / 3e-40 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10020819 [exp] 330 / 2e-107 AT1G25270 262 / 6e-85 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10012691 [exp] 325 / 2e-105 AT1G25270 259 / 1e-83 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10020987 [exp] 185 / 7e-52 AT1G25270 301 / 8e-100 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10020657 [exp] 174 / 7e-46 AT1G77170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023008 [exp] 152 / 4e-41 AT2G27360 115 / 4e-30 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10034763 [exp] 142 / 1e-36 AT3G48460 474 / 1e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10015066 [exp] 132 / 4e-34 AT1G25270 182 / 8e-55 nodulin MtN21 /EamA-like transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G015200 [exp] 215 / 1e-63 AT1G28590 213 / 3e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.001G108600 [exp] 190 / 2e-54 AT1G25270 293 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.004G225100 [exp] 187 / 5e-53 AT1G28640 177 / 8e-52 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G024300 [exp] 186 / 1e-52 AT5G03980 275 / 1e-90 SGNH hydrolase-type esterase superfamily protein (.1) Potri.001G463900 [exp] 182 / 1e-51 AT1G28650 228 / 3e-71 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.005G024900 [exp] 174 / 2e-48 AT5G03980 273 / 1e-89 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024966 [exp] 171 / 3e-47 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G025000 [exp] 171 / 3e-47 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024933 [exp] 168 / 3e-46 AT5G03980 255 / 1e-82 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G054400 [exp] 127 / 9e-32 AT5G45910 377 / 8e-130 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10012693 pacid=23148184 polypeptide=Lus10012693 locus=Lus10012693.g ID=Lus10012693.BGIv1.0 annot-version=v1.0 ATGGCAAAAGGGATGACGATGATGTCTTTGCATGGGACTTTCATGACATTTTTGGTTCTTGGTTTTCTTCTTCACCGCCATCAGTGCAGTGCCGTTGATC TCAAACCTTGTGGATTCAATGCCATCTACAATTTCGGAGATTCACTTTCCGATGCCGGCAATGCCGAGATGGAGTTTCCTGACCCGACAGGCTGGGGGTT CCCCCTCGGTGTCACCACCGGCGGACCCACCGGTCGATTTTCCGATGGGCTGTTGATCATCGATCGTATTGCCGAATCAGCGGGGCTTCCATTCACAAAT CCATATCTGAAGAAGAACTTGGACCATTCGAAAGGAGTGAACTTTGCCGTTGGCGGAACTGGACTCCTCTCCGAAGAGCTTCGTCGTAAGTGGAACGTTA CATTCAAGTACTCCCAGAGCTCCATTGATGTCCAACTTCGCTGGTACGATGAGCACCTTGCCAAAACCTTTAAAGATGAAGCCGCCCGTAAGGAGAGCCT GAAGCATTCACTATTTGTGATCGGCGGCGGAGGCAACGACTACGCAAATCTACACGGCACCCCGCCTGAGCTTGGTATTGTGGAAGCAAAGAAACTCCTC ATGCCTGATATGATGACTTGCCTTAGCGATGCTATTAAGAAATTCATCCGCGATGGAGCAACCAAAATAGTTGTTACTGGAATTAACCAAGGTGGGTGTG GGCCGTACAACTACCAGCCGGACAACAAGCTCCACTGTGACCCTGTGGCCAATGAGTATCACGAAATTCACAACCAGGTGGTCCAGAAAGAGATTCAACA ACTGAGCAAGGAATTCCCAAATGTGTTGATTGTTTATGGCGATCTTTGGGCTGCTACTCAGTGGATTTGGGACCGATATCAATCTCTAGGATTTGTGTAT CCCCAGAAGCCATGCTGTGGTGGTGATGGAAAGTACTGTGGGTTCCCAGGTGCACCCTACTTGGGGAATCCAAAGGAGGCAACACTATCGCAAACTCTAT ATGCAGAGAGCTTGGCCTTGACTTCTCCAGCCATTACCTTCACATTGGCCGTTTTATTTAGGTTAGAGAGCTTCGAGCTAACGACGAGAGTTGGAAAGGC GAAAGCAGTGGGGACATTGATCGGAGTCGTTGGAGCGACGGTGCTGACTTTCTACAGAGGCGTAGGGTTCAACCACTTGTCAACAAACATCCAACTGCTG AAACAAAGCCATGAAGAAAATAACAAGCATCAGTACCAAACAGGCAGCCACAGCTTCTTGGGTCTGGTTATGGCATTGGGAAGTTGCATTTCTCTTGCAA TTTGGTTAATAATGCAGGTAGCTTTTCTGATCTATACTAACTCGCTTTACAAGCTCGACGACATGTTTCGCAACCTTAATGGTGGATCGATCAGCTCTTT ATCTTTCGGGTTCAAATACTTTAATATGCCTTTGTCACTTTTGGTCATGTACCAGTCTCGAAACTTCCAAATGATATGCAAGACAGACCAATGCAGCTGC CATTACTCAACCACAGCTCTGATGTCGTTAATGGCGTCGATCCAGACGGCTGTTTTCTGCCTGTGGACCCAATGGAAGCTTGGATTGAACATTAGACTTC TTGCAGTTGCTTTCACGGGGATTGTTGCTTCTGGACTGGTTACGACAACCACCGTTCGAATTGTGGAAAGTAGAGGTCCCGTGTTCGCGTATGCTTTCAA CCCTTTGTCACTTGTGTTTGTTGCCATCATAAGCTGTTTGATGCTTGGTGAAGTGTTGCATCTGGGAAGCGTAATTGAAGGAATCCTGATCGTGTGCGGA TTGTACTTGGTGTTTTGGGGTAAAGTTAAAGAGTTCGAACCCCAGCCGGATGGATTCGAGAAGAGCACCGAAGATGTTATCAATGTTCATGTACGAACTA CTTCACCGGATGCTGGTTCAACGATCTCGAATGGGAGATTTGCGGTACCAAACTCGACACCATCCAGAAATTGA
AA sequence Show only first row Show all	>Lus10012693 pacid=23148184 polypeptide=Lus10012693 locus=Lus10012693.g ID=Lus10012693.BGIv1.0 annot-version=v1.0 MAKGMTMMSLHGTFMTFLVLGFLLHRHQCSAVDLKPCGFNAIYNFGDSLSDAGNAEMEFPDPTGWGFPLGVTTGGPTGRFSDGLLIIDRIAESAGLPFTN PYLKKNLDHSKGVNFAVGGTGLLSEELRRKWNVTFKYSQSSIDVQLRWYDEHLAKTFKDEAARKESLKHSLFVIGGGGNDYANLHGTPPELGIVEAKKLL MPDMMTCLSDAIKKFIRDGATKIVVTGINQGGCGPYNYQPDNKLHCDPVANEYHEIHNQVVQKEIQQLSKEFPNVLIVYGDLWAATQWIWDRYQSLGFVY PQKPCCGGDGKYCGFPGAPYLGNPKEATLSQTLYAESLALTSPAITFTLAVLFRLESFELTTRVGKAKAVGTLIGVVGATVLTFYRGVGFNHLSTNIQLL KQSHEENNKHQYQTGSHSFLGLVMALGSCISLAIWLIMQVAFLIYTNSLYKLDDMFRNLNGGSISSLSFGFKYFNMPLSLLVMYQSRNFQMICKTDQCSC HYSTTALMSLMASIQTAVFCLWTQWKLGLNIRLLAVAFTGIVASGLVTTTTVRIVESRGPVFAYAFNPLSLVFVAIISCLMLGEVLHLGSVIEGILIVCG LYLVFWGKVKEFEPQPDGFEKSTEDVINVHVRTTSPDAGSTISNGRFAVPNSTPSRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10012693 [exp]	0	1
					Lus10025402 [exp]	1.0	0.9233
AT1G53440			Leucine-rich repeat transmembr...		Lus10042505 [exp]	1.4	0.9074
AT3G27810	MYB	AtMYB3, ATMYB21	ARABIDOPSIS THALIANA MYB DOMA...		Lus10013081 [exp]	3.7	0.8695
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10015888 [exp]	3.7	0.8835
AT4G37470			alpha/beta-Hydrolases superfam...		Lus10037651 [exp]	4.0	0.8603
					Lus10030151 [exp]	5.7	0.8885
AT4G12300		CYP706A4	"cytochrome P450, family 706, ...		Lus10032216 [exp]	8.1	0.8932
AT5G36930			Disease resistance protein (TI...		Lus10041606 [exp]	8.5	0.8550
AT4G31370		FLA5	FASCICLIN-like arabinogalactan...		Lus10026223 [exp]	8.7	0.8541
AT5G18470			Curculin-like (mannose-binding...		Lus10004765 [exp]	9.6	0.8427

Compare expression of checked genes

Lus10012693 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.