Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58060 171 / 5e-48 RNA helicase family protein (.1) AT1G58050 119 / 4e-30 RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020816 [exp] 488 / 1e-171 AT1G58060 480 / 3e-154 RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G222900 [exp] 226 / 5e-67 AT1G58060 1757 / 0.0 RNA helicase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012695 pacid=23148235 polypeptide=Lus10012695 locus=Lus10012695.g ID=Lus10012695.BGIv1.0 annot-version=v1.0 ATGATCAGAATTTTTTTAACTGACTTCGACAATGCTACATTCGAGGATGCTCTTGATTGGTTGTGCTTGAATATACCGGGAAATGAGCTCCCTCTGAAGT TTTCTAGCCGAAATTCACAGCAGGATGGAGGTTCTGTCGGTGTTATCTCAACTGCACGCGAGGGCTATGTTCCTCCGGATGATTCTCCCAGAAAGAATCA GGAGGATCTGCAATATAATGCTTTTAAAATCAAAGAAAGAAAAAGTGAGGAAACCCTAGATTCATGCAAACAATCACAGGCTGATTGGATTAGGCAATAT ATGGAGCAGCAAGAAGAGGATGATGACAGAACTTGGGAGGATGATGCATTTGATCCAAGTATTACCCATAAGGATTCTGAACCACGGTCATATGATGTCA TTGCGAAAGATTACTATGCAGCCAGAGTTGAAGCTGCAAAAGCCAAGGAGAGCGGCGACAAGAAAAGCCAGGAACAAGCAGGCCATATCATCCGCAAACT CAAGCAGGAATTATCTGCTCTAGGACTTTCAGTTGATACCTTGTGCCAAGAGTTTGCTCATCAGTCTAACTCTGTCAGCATGCCCGAGGGCTCATATACT CCGGCCGCGGAACAGCTGGAAGCAACCCATATTGATTCAGAGGATTCTTCTCTCCCAATTTGGTCAGCGGAGGTATCACCAGTATGTGAAAACAATATCG TTCGCTCAAGTGACACTGAGGCTCCATCCTTACCTGCATCTACTAATACACTTGATCAGAGAAAAGACGACTTGGGTAATGATTCAGGAGAAGTGGAGCT TGGTGATTTATTTTTAGAAGATTCCGCACCTAAATAA
AA sequence Show only first row Show all	>Lus10012695 pacid=23148235 polypeptide=Lus10012695 locus=Lus10012695.g ID=Lus10012695.BGIv1.0 annot-version=v1.0 MIRIFLTDFDNATFEDALDWLCLNIPGNELPLKFSSRNSQQDGGSVGVISTAREGYVPPDDSPRKNQEDLQYNAFKIKERKSEETLDSCKQSQADWIRQY MEQQEEDDDRTWEDDAFDPSITHKDSEPRSYDVIAKDYYAARVEAAKAKESGDKKSQEQAGHIIRKLKQELSALGLSVDTLCQEFAHQSNSVSMPEGSYT PAAEQLEATHIDSEDSSLPIWSAEVSPVCENNIVRSSDTEAPSLPASTNTLDQRKDDLGNDSGEVELGDLFLEDSAPK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58060			RNA helicase family protein (....		Lus10012695 [exp]	0	1
					Lus10002303 [exp]	7.7	0.7090
AT2G32350			Ubiquitin-like superfamily pro...		Lus10039679 [exp]	9.2	0.7569
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10007208 [exp]	11.7	0.7521
AT1G19850	ARF	IAA24, ARF5, MP	MONOPTEROS, indole-3-acetic ac...		Lus10024320 [exp]	12.0	0.7421
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10018011 [exp]	16.9	0.7553
AT3G44830			Lecithin:cholesterol acyltrans...		Lus10019519 [exp]	34.3	0.7353
					Lus10032803 [exp]	36.5	0.6580
AT1G66430			pfkB-like carbohydrate kinase ...		Lus10002101 [exp]	42.7	0.6616
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10032597 [exp]	48.2	0.6679
					Lus10042684 [exp]	49.4	0.6572

Compare expression of checked genes

Lus10012695 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.