Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G01090 870 / 0 AKIN10, SnRK1.1 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) AT3G29160 801 / 0 ATKIN11, AKIN11, SnRK1.2 SNF1-RELATED PROTEIN KINASE 1.2, SNF1 kinase homolog 11 (.1.2.3) AT5G39440 629 / 0 SnRK1.3 SNF1-related protein kinase 1.3 (.1) AT2G26980 281 / 5e-90 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT5G21326 283 / 6e-90 Ca2+regulated serine-threonine protein kinase family protein (.1) AT4G24400 281 / 9e-90 ATCIPK8, PKS11, CIPK8, SnRK3.13 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) AT3G17510 275 / 1e-86 CIPK1, SnRK3.16 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) AT1G01140 271 / 4e-85 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT1G30270 271 / 7e-85 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G25110 271 / 1e-84 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001290 [exp] 998 / 0 AT3G01090 931 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10035801 [exp] 925 / 0 AT3G01090 920 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10036582 [exp] 888 / 0 AT3G01090 834 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Lus10028115 [exp] 275 / 2e-86 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10042816 [exp] 273 / 6e-86 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10019411 [exp] 270 / 5e-85 AT5G35410 729 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10030210 [exp] 267 / 7e-84 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10024448 [exp] 267 / 2e-83 AT5G25110 654 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10007448 [exp] 263 / 8e-82 AT5G25110 650 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G115900 [exp] 915 / 0 AT3G01090 879 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.017G087900 [exp] 898 / 0 AT3G01090 880 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.013G090800 [exp] 698 / 0 AT3G01090 728 / 0.0 SNF1-RELATED PROTEIN KINASE 1.1, SNF1 kinase homolog 10 (.1.2.3) Potri.001G222600 [exp] 282 / 1e-89 AT2G26980 752 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.010G002500 [exp] 275 / 9e-87 AT3G17510 631 / 0.0 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) Potri.009G021000 [exp] 275 / 1e-86 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.006G062800 [exp] 275 / 2e-86 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.014G104200 [exp] 271 / 2e-85 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.002G177900 [exp] 270 / 5e-85 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.018G096042 [exp] 269 / 4e-84 AT5G57630 535 / 0.0 SNF1-RELATED PROTEIN KINASE 3.4, CBL-interacting protein kinase 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0573 [flax] [poplar] KA1-like PF02149 [flax] [poplar] KA1 Kinase associated domain 1 CL0214 [flax] [poplar] UBA PF00627 [flax] [poplar] UBA UBA/TS-N domain
Representative CDS sequence Show only first row Show all	>Lus10012696 pacid=23148164 polypeptide=Lus10012696 locus=Lus10012696.g ID=Lus10012696.BGIv1.0 annot-version=v1.0 ATGGATGGATCAAGTAATCGAGGCAGCAGTAATGTGGATATGTACTTGCCCAATTACAAGCTTGGTAAAACTCTTGGAATTGGTTCCTTTGGCAAGGTGA AAATTGCTGAGCATGCCTTGACGGGACACAAGGTTGCTATCAAGATACTTAATCGCCGTAAGATTAAAAATATGGACATGGAAGAAAAAGTGAGAAGAGA AATCAAAATCTTAAGATTGTTTATGCATCCTCATATCATACGGCTATATGAGGTGATTGAAACTCCGACTGATATATACGTTGTGATGGAGTATGTCAAA TCTGGGGAACTGTTTGATTATATTGTGGAGAAAGGAAGGTTGCAGGAAGATGAGGCCCGCAATTTTTTCCAGCAGATTATTTCTGGCGTGGAATACTGCC ATAGGAATATGGTTGTTCACAGAGATCTTAAACCTGAAAATTTGCTATTGGATTCCAAATGCAATGTCAAAATAGCTGATTTTGGGTTGAGCAATATAAT GAGAGATGGCCACTTTCTGAAGACAAGTTGTGGAAGCCCAAACTATGCAGCCCCAGAGGTCATCTCTGGGAAATTGTATGCTAGCCCTGAAGTGGATGTG TGGGGTTGTGGAGTCATCTTGTATGCTCTTCTTTGTGGTACCCTTCCATTTGATGATGAAAACATTCCCAACCTCTTCAAAAAAATAAAGGGAGGGATAT ACACTCTTCCTAGTCATTTATCACCGAGTGCAAGAGATCTTATCCCTAGGATGCTTGTGGTTGATCCAATGAAGCGAATGACCATTCCAGAAATTCGTCA GCATCCATGGTTCCAAGCTCGTCTCCCACGCTATTTGGCTGTTCCTCCACCAGACACCATGCAACAAGCTAAAAAGATTGATGACGAGATTCTACAGGAA GTGATTAGAATGGGATTTGACAGGAACCAACTGGTTGAATCTCTTCGCAACAGAATACAGAATGAGGGTACTGTGGCATACTATTTGCTTCTGGACAATC GGTTCCGGGTCTCTAATGGATATCTTGGAGCTGAATTCCAAGAAACTATGGAAAGTGCTTACAATCGTGCACATCTCAGGGAACCTGCTTCTTCACCAGT TGGTCATCGCCCTCCTGGGTATATGGAGTACCAAGGGACTGGATTGAGGTCACAATATCATTTTGATAGGAAATGGGCTCTTGGACTTCAGTCTCGAGCC CACCCCAGAGAAATAATGACAGAAGTTCTGAAAGCTTTGCAAGAACTGAATGTAGGCTGGAAGAAGATCGGTCACTATAACATGAAGTGCAGGTGGTTTC CTGGCAGTCCTGGACACCTTGATGGCATGGGAAATGATGGTCTGGCCAACAATAATTTCTTTGGGGATGAATCTTCCATTATTGAGAATGACGGAGTAAC CAGAGCATCAAACGTTGTGAAATTTGAAGTGCAGTGCAAGCAACTACTCAATGAAGCTGCAACTCTGAACCCAGACAGTGACCTTCCCAACCCACCGCTC TACAAGACGCGCGAGGAAAAGTACTTGTTGGATATGCAGAGAGTGCAAGGACCTCAGTTTCTCTTCTTAGACCTTTGTGCAGCTTTCCTTGCGCAGCTCC GTGTTCTTTAG
AA sequence Show only first row Show all	>Lus10012696 pacid=23148164 polypeptide=Lus10012696 locus=Lus10012696.g ID=Lus10012696.BGIv1.0 annot-version=v1.0 MDGSSNRGSSNVDMYLPNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKNMDMEEKVRREIKILRLFMHPHIIRLYEVIETPTDIYVVMEYVK SGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYASPEVDV WGCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPSARDLIPRMLVVDPMKRMTIPEIRQHPWFQARLPRYLAVPPPDTMQQAKKIDDEILQE VIRMGFDRNQLVESLRNRIQNEGTVAYYLLLDNRFRVSNGYLGAEFQETMESAYNRAHLREPASSPVGHRPPGYMEYQGTGLRSQYHFDRKWALGLQSRA HPREIMTEVLKALQELNVGWKKIGHYNMKCRWFPGSPGHLDGMGNDGLANNNFFGDESSIIENDGVTRASNVVKFEVQCKQLLNEAATLNPDSDLPNPPL YKTREEKYLLDMQRVQGPQFLFLDLCAAFLAQLRVL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G01090		AKIN10, SnRK1.1	SNF1-RELATED PROTEIN KINASE 1....		Lus10012696 [exp]	0	1
AT2G17080			Arabidopsis protein of unknown...		Lus10025124 [exp]	10.8	0.9204
AT2G41250			Haloacid dehalogenase-like hyd...		Lus10010452 [exp]	13.4	0.9104
AT1G12580		PEPKR1	phosphoenolpyruvate carboxylas...		Lus10038889 [exp]	13.8	0.8873
AT3G25910			Protein of unknown function (D...		Lus10019436 [exp]	18.1	0.9144
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10009808 [exp]	19.9	0.9168
AT1G47750		PEX11A	peroxin 11A (.1)		Lus10003945 [exp]	20.8	0.9067
AT1G56290			CwfJ-like family protein (.1)		Lus10022209 [exp]	25.1	0.8609
AT1G18590		SOT17, ATSOT17,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Lus10033721 [exp]	28.6	0.9113
AT5G46180		DELTA-OAT	ornithine-delta-aminotransfera...		Lus10038510 [exp]	31.5	0.9009
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Lus10038086 [exp]	35.4	0.9107

Compare expression of checked genes

Lus10012696 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.