Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10950 824 / 0 AtTMN1 transmembrane nine 1 (.1) AT1G14670 353 / 5e-113 Endomembrane protein 70 protein family (.1) AT2G01970 352 / 7e-113 Endomembrane protein 70 protein family (.1) AT5G37310 348 / 3e-111 Endomembrane protein 70 protein family (.1) AT1G08350 290 / 7e-89 Endomembrane protein 70 protein family (.1.2) AT2G24170 238 / 4e-69 Endomembrane protein 70 protein family (.1) AT3G13772 232 / 8e-67 AtTMN7 transmembrane nine 7 (.1) AT5G25100 229 / 5e-66 Endomembrane protein 70 protein family (.1.2) AT5G10840 228 / 4e-65 Endomembrane protein 70 protein family (.1) AT1G55130 219 / 3e-62 AtTMN6 transmembrane nine 6, Endomembrane protein 70 protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001291 [exp] 932 / 0 AT1G10950 1000 / 0.0 transmembrane nine 1 (.1) Lus10001368 [exp] 876 / 0 AT1G10950 990 / 0.0 transmembrane nine 1 (.1) Lus10015463 [exp] 794 / 0 AT1G10950 910 / 0.0 transmembrane nine 1 (.1) Lus10042286 [exp] 346 / 2e-110 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1) Lus10031876 [exp] 344 / 1e-109 AT2G01970 1059 / 0.0 Endomembrane protein 70 protein family (.1) Lus10031308 [exp] 344 / 1e-109 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1) Lus10026371 [exp] 305 / 3e-93 AT2G01970 912 / 0.0 Endomembrane protein 70 protein family (.1) Lus10004873 [exp] 265 / 1e-79 AT1G08350 668 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10026254 [exp] 236 / 2e-68 AT5G10840 1129 / 0.0 Endomembrane protein 70 protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G015300 [exp] 814 / 0 AT1G10950 897 / 0.0 transmembrane nine 1 (.1) Potri.004G218300 [exp] 812 / 0 AT1G10950 920 / 0.0 transmembrane nine 1 (.1) Potri.017G144181 [exp] 350 / 7e-112 AT5G37310 979 / 0.0 Endomembrane protein 70 protein family (.1) Potri.017G144241 [exp] 346 / 2e-110 AT5G37310 989 / 0.0 Endomembrane protein 70 protein family (.1) Potri.004G075450 [exp] 340 / 3e-108 AT5G37310 953 / 0.0 Endomembrane protein 70 protein family (.1) Potri.012G042300 [exp] 275 / 1e-83 AT1G14670 762 / 0.0 Endomembrane protein 70 protein family (.1) Potri.004G203200 [exp] 268 / 1e-80 AT1G08350 671 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.018G018400 [exp] 235 / 4e-68 AT5G10840 1070 / 0.0 Endomembrane protein 70 protein family (.1) Potri.006G184200 [exp] 233 / 2e-67 AT2G24170 961 / 0.0 Endomembrane protein 70 protein family (.1) Potri.018G106600 [exp] 231 / 2e-66 AT2G24170 971 / 0.0 Endomembrane protein 70 protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02990 [flax] [poplar] EMP70 Endomembrane protein 70
Representative CDS sequence Show only first row Show all	>Lus10012697 pacid=23148175 polypeptide=Lus10012697 locus=Lus10012697.g ID=Lus10012697.BGIv1.0 annot-version=v1.0 ATGTCCTCCTCCGCTGTCCCAATCCAATATCTGCACATCTTCTTCTTCGCATTTTTTCTCGTCTCTCCTCTCGTTCTCGCCTCCGATTCAGATCACAAGT ATCAACCAGATGAACCTGTCACTCTCTGGGTAAACAAAGTGGGTCCTTATAATAATCCACAAGAAACATACAACTACTACAGCCTCCCATTCTGCCGTCC AGCTGGAAATTCTGCTCACAAATGGGGTGGCCTTGGTGAAGTTCTAGGCGGAAATGAACTTATTGATAGTTTGCTTGACATTAAGTTTAAGAAGAATGTA GAAAAAGGTTCCATCTGTCAGCTTGACCTTGATGAAGCTAAGGTCACAAAATTCAAAGATGCTATTGACAACAGTTACTGGTTTGAGTTCTTCATGGATG ACTTGCCATTGTGGGGCTTTGTGGGGGAGTTGCATCCTGATAAAAACAGTGACAGTGGCAAGCATGTTCTGTACACTCATAAGATTATTACAGTTAAATA TAATAAAAATCAGATAATTCATGTCAATCTTACTCAAGAGAGTGCCAAACTCCTTGAACCAGGGAAAAGCTTGGAAATGACATACTCCGTCAAATGGATT CCGACTAATGTTTCTTTTGCTCGTCGCTTTGATGTCTACTTGGATTACCCTTTTTTTGAGCACCAGATCCATTGGTTCTCCATTTTCAATTCTTTCATGA TGGTCATCTTTCTCACTGGGCTGGTCTCTATGATATTGATGCGTACTCTGAGAAATGACTATGCAAAGTACGCTCGAGAAGATGATGATCTGGAGTCTTT GGAAAGAGATGTTAGCGAAGAGTCTGGCTGGAAGCTTATACATGGAGATGTTTTCCGCCCAACTCGCAATTTGGCTCTTCTGTCAGCTGTTGTCGGAACT GGTGCTCAACTTGCGCTGCTTGTGCTTCTTGTCATCTTATTGGCTATTATTGGCATGTTGTATGTTGGGAGAGGAGCAATTGTGACGACTTTCATTGTAT GCTATGCTCTTACTTCATTCATTTCTGGTTATGTTAGCGGAGGGATGTATTCCCGCCATGGGGGTAAAAGCTGGATAAAAGCAATGATCCTCACAGCCTC TTTGTTCCCATTTATGTGCTTTGGGATTGGCTTTGTTCTAAATACAATTGCCATATTCTATGGTTCCCTAGCTGCCATCCCATTCGGTACTATGGTGGTT GTATTTGTTATCTGGGCATTCATATCTTTCCCTCTAGCACTTCTTGGTACAGTTGTCGGCAGAAATTGGTCTGGTGCTCCAAACAACCCCTGCCGAGTGA AGACCATTCCCCGTCTAATTCCAGAGAAGAAATGGTACCTAACTCAATCAGTAGTATCAATGATGGGCGGACTGCTACCCTTTGGCAGCATATTCATTGA GATGTACTTTGTCTTCACTTCGTTTTGGAATTACAAGGTCTACTACGTGTATGGCTTCATGCTGCTTGTTTTCCTGATTCTTGTCATTGTAACTGTTTGC GTGACAATCGTGGGGACATATTTCTTGCTAAATGCTGAGAACTACCATTGGCAATGGACCTCATTCTTCTCTGCTGCCTCAACCGCAGTTTATGTATACT TGTATTCCATTTACTATTACTACGTGAAGACGAAGATGTCGGGCTTCTTCCAGACCAGCTTCTACTTCGGATACACTTCGATGTTCTGTCTTGGCCACGG CATTCTCTGTGGTGAGTTCTTTATGCTTAGATTATGTCCATCAGCTTGCATTTTCATGTTACTCACCTTGTTCCTCCCATCAGTTGGCTTAATAATGTTT ATGCTAGGGAAAGCTGTTTGTAGGTTACTTGGTACTGAGGATCTACAGAAACATCAAGTGCGACTAGAATCGGGTGGCCAGGCCGGACTTCGAACAGGTA GGTGGCTTCTAGTGAGAACCGCAATATTAGTTAGCATCATCCATCGAAGGGAAAGATTCACCGAAAGGAAGCCACTAGTTCGACGAATCATGAACAAGGT TTTGCAGGATGGCGGGGAGAACATAGCTCTTCCCTGGAGTAGGGAATTGCTTCAAGAGATTTACTCTTTTTGTTTGGCTCCCATATGTAAGTGA
AA sequence Show only first row Show all	>Lus10012697 pacid=23148175 polypeptide=Lus10012697 locus=Lus10012697.g ID=Lus10012697.BGIv1.0 annot-version=v1.0 MSSSAVPIQYLHIFFFAFFLVSPLVLASDSDHKYQPDEPVTLWVNKVGPYNNPQETYNYYSLPFCRPAGNSAHKWGGLGEVLGGNELIDSLLDIKFKKNV EKGSICQLDLDEAKVTKFKDAIDNSYWFEFFMDDLPLWGFVGELHPDKNSDSGKHVLYTHKIITVKYNKNQIIHVNLTQESAKLLEPGKSLEMTYSVKWI PTNVSFARRFDVYLDYPFFEHQIHWFSIFNSFMMVIFLTGLVSMILMRTLRNDYAKYAREDDDLESLERDVSEESGWKLIHGDVFRPTRNLALLSAVVGT GAQLALLVLLVILLAIIGMLYVGRGAIVTTFIVCYALTSFISGYVSGGMYSRHGGKSWIKAMILTASLFPFMCFGIGFVLNTIAIFYGSLAAIPFGTMVV VFVIWAFISFPLALLGTVVGRNWSGAPNNPCRVKTIPRLIPEKKWYLTQSVVSMMGGLLPFGSIFIEMYFVFTSFWNYKVYYVYGFMLLVFLILVIVTVC VTIVGTYFLLNAENYHWQWTSFFSAASTAVYVYLYSIYYYYVKTKMSGFFQTSFYFGYTSMFCLGHGILCGEFFMLRLCPSACIFMLLTLFLPSVGLIMF MLGKAVCRLLGTEDLQKHQVRLESGGQAGLRTGRWLLVRTAILVSIIHRRERFTERKPLVRRIMNKVLQDGGENIALPWSRELLQEIYSFCLAPICK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10012697 [exp]	0	1
AT1G34130		STT3B	staurosporin and temperature s...		Lus10041985 [exp]	2.6	0.9410
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Lus10041472 [exp]	3.6	0.9213
AT5G12970			Calcium-dependent lipid-bindin...		Lus10031244 [exp]	3.9	0.9355
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001291 [exp]	4.9	0.9302
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Lus10020887 [exp]	4.9	0.9402
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Lus10034800 [exp]	5.5	0.9066
AT2G41490		GPT	UDP-glcnac-adolichol phosphate...		Lus10012300 [exp]	5.5	0.9233
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001368 [exp]	5.9	0.9297
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10022911 [exp]	6.0	0.9400
AT2G42520			P-loop containing nucleoside t...		Lus10029337 [exp]	7.7	0.9224

Compare expression of checked genes

Lus10012697 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.