Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G06599 499 / 4e-179 ubiquitin family protein (.1) AT5G45700 42 / 0.0003 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001294 [exp] 570 / 0 AT4G06599 550 / 0.0 ubiquitin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G219300 [exp] 502 / 1e-180 AT4G06599 542 / 0.0 ubiquitin family protein (.1) Potri.003G011300 [exp] 477 / 9e-171 AT4G06599 503 / 1e-180 ubiquitin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0137 [flax] [poplar] HAD PF03031 [flax] [poplar] NIF NLI interacting factor-like phosphatase CL0072 [flax] [poplar] Ubiquitin PF00240 [flax] [poplar] ubiquitin Ubiquitin family
Representative CDS sequence Show only first row Show all	>Lus10012700 pacid=23148204 polypeptide=Lus10012700 locus=Lus10012700.g ID=Lus10012700.BGIv1.0 annot-version=v1.0 ATGGCGGCGGAGTCGTCTTCGGCGTCGGCGATGGTAGAGGAACTGACTCTGTCAGTGAAGTGGAGCGGCAAGGAGTACACCGTCCGAGTGTGCGGAGACG ATTCGGTGGCTGAATTGAAGCGACGGATTTGCGAAGCCACTAATGTACTCCCCAAACGACAGAAGCTCTTGTACCCTAAAGTCGGCAACAAGCTCGCCGA CGACTCTCTTCTCCTCTCCCAGCTTCCGCTCAAGTCCTCGCTCAAGATGACGATGATCGGAACTGTAGAGGATGACATAATCGTGGACCAAGTGGATGAT CCGGAGATCGTCGATGATTTTCAGCTTGGACAAGATGAAGCCATCGATATCAAGGACAAGGAAGTTAATAAGCAGAAGTTGAAGAGACGTGTGGATCAAT ACAAGATCAAGCTTCGCAATCCATGCCGTGAAGGAAAGAAGTTGCTTGTGCTGGATATTGACTACACCCTTTTCGATCACCGGTCAACAGCAGAGAACCC TCTGGAACTAATGCGTCCATATCTCCATGAATTCCTTCCAGCCGCTTATGCAGAATATGATATAATGATATGGTCTGCAACCAGCATGAAGTGGGTTGAA TTAAAGATGGGAGAGCTTGGAGTGCTAAGCAATCCCAACTACAAAATCACCGCTCTCCTGGACCATTTAGGTATGATCACTGTACAATCAGATGCCCGTG GGATCTTCGACTGCAAGCCCCTTGGATTGATATGGGCTCATTTCCCCGAGTTTTACGGTCCGAAGAACACCATAATGTTCGATGATTTGAGACGGAACTT CGTGATGAACCCTCAAAACGGTTTAACAATCAAGCCCTTCAGGAAGGCTCATGCAAACCGCGATAGCGATCAGGAGCTTAGGAAGCTAACTGAGTACCTT CTTGCCATAGCGGAGCTAGATGATATAAGCAGCCTGGATCACTCTAAATGGAAGTACTATGCAGAGGACGGCTCGAAAAGGCGTAGACAAGCATAA
AA sequence Show only first row Show all	>Lus10012700 pacid=23148204 polypeptide=Lus10012700 locus=Lus10012700.g ID=Lus10012700.BGIv1.0 annot-version=v1.0 MAAESSSASAMVEELTLSVKWSGKEYTVRVCGDDSVAELKRRICEATNVLPKRQKLLYPKVGNKLADDSLLLSQLPLKSSLKMTMIGTVEDDIIVDQVDD PEIVDDFQLGQDEAIDIKDKEVNKQKLKRRVDQYKIKLRNPCREGKKLLVLDIDYTLFDHRSTAENPLELMRPYLHEFLPAAYAEYDIMIWSATSMKWVE LKMGELGVLSNPNYKITALLDHLGMITVQSDARGIFDCKPLGLIWAHFPEFYGPKNTIMFDDLRRNFVMNPQNGLTIKPFRKAHANRDSDQELRKLTEYL LAIAELDDISSLDHSKWKYYAEDGSKRRRQA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G06599			ubiquitin family protein (.1)		Lus10012700 [exp]	0	1
AT5G07950			unknown protein		Lus10021622 [exp]	5.9	0.8768
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Lus10000360 [exp]	19.4	0.8567
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10043046 [exp]	20.3	0.8663
AT2G03070		MED8	mediator subunit 8 (.1)		Lus10035721 [exp]	25.1	0.8486
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10033124 [exp]	30.7	0.8524
AT3G05210		UVR7, ERCC1	UV REPAIR DEFICIENT 7, nucleot...		Lus10004462 [exp]	32.6	0.8452
AT4G02120			CTP synthase family protein (....		Lus10010020 [exp]	43.4	0.8541
AT5G65530			Protein kinase superfamily pro...		Lus10025713 [exp]	46.9	0.8527
AT2G23890			HAD-superfamily hydrolase, sub...		Lus10015485 [exp]	50.1	0.8515
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10033770 [exp]	67.1	0.8450

Compare expression of checked genes

Lus10012700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.