Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11050 738 / 0 Protein kinase superfamily protein (.1) AT2G48010 328 / 1e-103 RKF3 receptor-like kinase in in flowers 3 (.1) AT4G01330 236 / 3e-70 Protein kinase superfamily protein (.1.2) AT1G01540 235 / 5e-70 Protein kinase superfamily protein (.1.2) AT1G70520 237 / 6e-69 ASG6, CRK2 ALTERED SEED GERMINATION 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 2 (.1) AT4G34500 223 / 1e-65 Protein kinase superfamily protein (.1) AT1G29730 231 / 4e-65 Leucine-rich repeat transmembrane protein kinase (.1) AT3G24540 223 / 6e-65 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G09440 221 / 6e-65 Protein kinase superfamily protein (.1) AT4G02630 221 / 1e-64 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001295 [exp] 1180 / 0 AT1G11050 770 / 0.0 Protein kinase superfamily protein (.1) Lus10029711 [exp] 516 / 4e-176 AT1G11050 549 / 0.0 Protein kinase superfamily protein (.1) Lus10018855 [exp] 414 / 2e-139 AT1G11050 473 / 7e-163 Protein kinase superfamily protein (.1) Lus10028549 [exp] 409 / 1e-138 AT1G11050 448 / 8e-155 Protein kinase superfamily protein (.1) Lus10028552 [exp] 411 / 1e-135 AT1G11050 463 / 1e-156 Protein kinase superfamily protein (.1) Lus10018861 [exp] 404 / 4e-133 AT1G11050 465 / 4e-157 Protein kinase superfamily protein (.1) Lus10029714 [exp] 400 / 4e-132 AT1G11050 411 / 6e-137 Protein kinase superfamily protein (.1) Lus10018860 [exp] 345 / 6e-113 AT1G11050 384 / 6e-129 Protein kinase superfamily protein (.1) Lus10028551 [exp] 342 / 9e-109 AT1G11050 442 / 2e-148 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G133000 [exp] 789 / 0 AT1G11050 830 / 0.0 Protein kinase superfamily protein (.1) Potri.004G084900 [exp] 785 / 0 AT1G11050 821 / 0.0 Protein kinase superfamily protein (.1) Potri.017G132800 [exp] 783 / 0 AT1G11050 805 / 0.0 Protein kinase superfamily protein (.1) Potri.005G181800 [exp] 563 / 0 AT1G11050 604 / 0.0 Protein kinase superfamily protein (.1) Potri.017G132250 [exp] 389 / 2e-131 AT1G11050 430 / 2e-148 Protein kinase superfamily protein (.1) Potri.014G136400 [exp] 310 / 3e-96 AT2G48010 794 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.014G136466 [exp] 303 / 2e-93 AT2G48010 792 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.005G040200 [exp] 292 / 4e-90 AT2G48010 613 / 0.0 receptor-like kinase in in flowers 3 (.1) Potri.013G028000 [exp] 286 / 9e-89 AT2G48010 497 / 6e-171 receptor-like kinase in in flowers 3 (.1) Potri.014G088800 [exp] 236 / 3e-70 AT1G01540 687 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10012701 pacid=23148223 polypeptide=Lus10012701 locus=Lus10012701.g ID=Lus10012701.BGIv1.0 annot-version=v1.0 ATGGATTCCGGCAGTCTCCCTCTCCGTCTCATAGCAATCTCAATTGGCTTCTTAGGTTTTGTCATCTCCTCCGCCTCGTCGTCGTCATCATGCCCAATGA ATTTCGACTACGTCACCAGACTCCCATGGAACAGATCATCCTGCCAGAACCACCTCCTCCAAAGAAACAACGACAGCAGCAAAGACCCATGTTGCAGAAC TCTCCTCTCCCTCTTCGGCATATCTCTAGCTCTCCATCTAAAGCAAACCTCCAACTTCCACCTCCCAGATCTCCCCACTTCCATCTCCTGCATCGAAAAT TTCAAATCCAAGCTTTCAAATCAGAACGACGACGTTTCCTACTGCTTCCACCCTCAAAACTACGTGATCTCCCCAAACATCTGCGCTCGAATCCAGTCAA CCAAGGATTGGGTTGCTGCAGTTGGTTCGTCAAGTCCCCTCGACTCGGCTTGCAAACCGGACCTCACCCATCTCACAGCTTGTGATTCGTGCGTGGCGGC CGGGTTTCGGATTCAGTCGACGTTGGTCTCGATCGACGGTAACAAATCTCACGCTACTGATTGCTTCTACTTCGCAGTCCTTTACGCCGCCGGGGTGGTC AACGATTTCGGTCCCGATAGCTACGGCGCTGCGTCCTGTATTTTCGGTTTGGACTTGGTTGGTTCGACCGAAATGGGTAATCCGGTTCGTAAATCGTCAC CTCTGGTTACTGGTTTAGCCAGCTCTGTTGCTGGTTTGATCGCTGTGTCTATGGCAGGAGGTTTCTGGTTTTGGTACGATAAGAGAAGGAAGAGGAGGCT AATTAGGAAAGAAGAACAAGCATTATCCAGGCCACGATTGAGGCCGAATACCGGTTCGATTTGGTTCAAGATCGATGAGCTCGAGAAGGCAACCAATGGC TTTTCGGACAGCAACTTCATTGGGAGAGGTGGGTTTGGAATTGTGTACAAGGGTGTTCTCTATGACGGGACGAGTGTGGCTGTTAAGAGGGTTCTCGAGT CTGATTTCCAGGGTGATGCTGAGTTTCGGAACGAGATTGAGATCATCAGTAACTTGAAGCACCGGAATTTGGTCCCGCTTCGAGGCTGTTGCGTGATCGA TGGCCGCGGAGGGGACGACGATGTCGATGCAGGCGAGAGTCAGAGGTACCTTGTGTATGATTACATGGAGAATGGCAACCTTGATGACCATTTGTACCCG GTAGTCGCGACGAATCTAGAGGCAGCCTCTCCCAGACCAGGGTCAAACCCATCTCGAGGAAAAGAAGAAGTGGGGCCATTGAGTTGGCAACAGAGGAAGA ACATAATACTGGACGTGGCGAAAGGGCTAGCTTACTTGCATCACGGAGTGAAGCCAGCAATTTTCCACAGAGACATCAAGGGCACAAACATACTACTCGA CTCTGACATGAGAGCTAGAGTCGCCGATTTCGGGCTAGCTAAGCAAAGCCTCGAAGGGCAGTCTCATCTCACCACCAGAGTGGCGGGCACTCACGGCTAC TTAGCCCCCGAGTACGCACTCTACGGCCAGCTGACAGAAAAGAGCGACGTCTACAGCTTTGGAGTCGTTGTGCTCGAGATAATGTGCGGTAGGAAGGCTC TCGACATGTCTTCCTCGGACGGGTTTCTGATCACCGACTGGGCTTGGTCGCGAGTCAAGGCCGGGAAACTCGATCAGGCGCTGGATCGGTCCTTGTTATT AAGGGGCGGTGAGGATTCGACGTCGAATCAGAAGGTGGTGATGGAGAGGTTTGTGCTGGTGGGGATTCTGTGTGCTCATGTTATGGTTGCTTTGAGGCCG ACTATATTGGACGCGTTGAAGATGCTGGAAGGTGATGTGGAAGTTCCGCCATTGCCGGATCGGCCACTGCCTCTTTCGCATCCTTCTTTCTCCGGTGGCG GTGATGCAAGCCATGCTTTTAGCGTCTCTCCGGCTCTCAGTGGGCCGCAGCTGTACAGCAATGATATGCTTAGGTAA
AA sequence Show only first row Show all	>Lus10012701 pacid=23148223 polypeptide=Lus10012701 locus=Lus10012701.g ID=Lus10012701.BGIv1.0 annot-version=v1.0 MDSGSLPLRLIAISIGFLGFVISSASSSSSCPMNFDYVTRLPWNRSSCQNHLLQRNNDSSKDPCCRTLLSLFGISLALHLKQTSNFHLPDLPTSISCIEN FKSKLSNQNDDVSYCFHPQNYVISPNICARIQSTKDWVAAVGSSSPLDSACKPDLTHLTACDSCVAAGFRIQSTLVSIDGNKSHATDCFYFAVLYAAGVV NDFGPDSYGAASCIFGLDLVGSTEMGNPVRKSSPLVTGLASSVAGLIAVSMAGGFWFWYDKRRKRRLIRKEEQALSRPRLRPNTGSIWFKIDELEKATNG FSDSNFIGRGGFGIVYKGVLYDGTSVAVKRVLESDFQGDAEFRNEIEIISNLKHRNLVPLRGCCVIDGRGGDDDVDAGESQRYLVYDYMENGNLDDHLYP VVATNLEAASPRPGSNPSRGKEEVGPLSWQQRKNIILDVAKGLAYLHHGVKPAIFHRDIKGTNILLDSDMRARVADFGLAKQSLEGQSHLTTRVAGTHGY LAPEYALYGQLTEKSDVYSFGVVVLEIMCGRKALDMSSSDGFLITDWAWSRVKAGKLDQALDRSLLLRGGEDSTSNQKVVMERFVLVGILCAHVMVALRP TILDALKMLEGDVEVPPLPDRPLPLSHPSFSGGGDASHAFSVSPALSGPQLYSNDMLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G11050			Protein kinase superfamily pro...		Lus10012701 [exp]	0	1
AT5G40470			RNI-like superfamily protein (...		Lus10022269 [exp]	1.7	0.8845
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Lus10031680 [exp]	3.0	0.8549
AT4G35070			SBP (S-ribonuclease binding pr...		Lus10014118 [exp]	4.0	0.8379
AT1G74740		CDPK1A, CPK30, ...	CALCIUM-DEPENDENT PROTEIN KINA...		Lus10042185 [exp]	5.7	0.8634
AT3G06240			F-box family protein (.1)		Lus10037892 [exp]	7.7	0.8345
AT4G36190			Serine carboxypeptidase S28 fa...		Lus10041817 [exp]	8.5	0.8355
AT1G18720			Protein of unknown function (D...		Lus10030447 [exp]	8.9	0.8353
AT5G53120		SPMS, SPDS3, AT...	spermidine synthase 3 (.1.2.3....		Lus10003398 [exp]	9.2	0.8470
AT2G45210			SAUR-like auxin-responsive pro...		Lus10001985 [exp]	9.4	0.8353
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10041353 [exp]	10.6	0.8441

Compare expression of checked genes

Lus10012701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.