Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77930 359 / 4e-126 Chaperone DnaJ-domain superfamily protein (.1.2) AT4G36040 58 / 4e-10 J11 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) AT5G59610 59 / 5e-10 Chaperone DnaJ-domain superfamily protein (.1.2) AT1G80030 57 / 5e-09 Molecular chaperone Hsp40/DnaJ family protein (.1.2.3) AT3G17830 55 / 2e-08 Molecular chaperone Hsp40/DnaJ family protein (.1) AT4G09350 53 / 5e-08 NdhT, CRRJ NADH dehydrogenase-like complex T, CHLORORESPIRATORY REDUCTION J, Chaperone DnaJ-domain superfamily protein (.1) AT1G56300 52 / 5e-08 Chaperone DnaJ-domain superfamily protein (.1) AT2G17880 52 / 5e-08 Chaperone DnaJ-domain superfamily protein (.1) AT3G47940 53 / 9e-08 DNAJ heat shock family protein (.1) AT1G80920 50 / 1e-07 AtToc12, AtJ8, J8 translocon at the outer envelope membrane of chloroplasts 12, Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001296 [exp] 528 / 0 AT1G77930 370 / 2e-130 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10040777 [exp] 61 / 1e-10 AT5G59610 246 / 6e-81 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10016510 [exp] 61 / 2e-10 AT5G59610 252 / 2e-83 Chaperone DnaJ-domain superfamily protein (.1.2) Lus10025060 [exp] 56 / 9e-10 AT4G36040 102 / 7e-29 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10031908 [exp] 58 / 2e-09 AT3G17830 457 / 3e-157 Molecular chaperone Hsp40/DnaJ family protein (.1) Lus10014352 [exp] 55 / 3e-09 AT1G80920 135 / 2e-41 translocon at the outer envelope membrane of chloroplasts 12, Chaperone DnaJ-domain superfamily protein (.1) Lus10020685 [exp] 55 / 4e-09 AT1G56300 200 / 1e-66 Chaperone DnaJ-domain superfamily protein (.1) Lus10034484 [exp] 54 / 4e-09 AT4G36040 100 / 3e-28 DnaJ11, Chaperone DnaJ-domain superfamily protein (.1) Lus10029862 [exp] 55 / 6e-09 AT1G56300 201 / 9e-67 Chaperone DnaJ-domain superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G090600 [exp] 357 / 3e-125 AT1G77930 376 / 1e-132 Chaperone DnaJ-domain superfamily protein (.1.2) Potri.004G172300 [exp] 60 / 4e-11 AT2G17880 115 / 2e-33 Chaperone DnaJ-domain superfamily protein (.1) Potri.009G131800 [exp] 56 / 4e-10 AT2G17880 109 / 9e-32 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G240700 [exp] 56 / 3e-09 AT2G17880 105 / 2e-29 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G113100 [exp] 55 / 3e-09 AT2G17880 139 / 6e-43 Chaperone DnaJ-domain superfamily protein (.1) Potri.013G010800 [exp] 55 / 3e-09 AT1G56300 200 / 9e-67 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G020800 [exp] 54 / 7e-09 AT2G17880 110 / 3e-31 Chaperone DnaJ-domain superfamily protein (.1) Potri.015G035300 [exp] 56 / 8e-09 AT3G17830 504 / 4e-175 Molecular chaperone Hsp40/DnaJ family protein (.1) Potri.002G020700 [exp] 54 / 8e-09 AT2G17880 108 / 3e-30 Chaperone DnaJ-domain superfamily protein (.1) Potri.001G072700 [exp] 55 / 1e-08 AT5G59610 254 / 3e-84 Chaperone DnaJ-domain superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10012702 pacid=23148209 polypeptide=Lus10012702 locus=Lus10012702.g ID=Lus10012702.BGIv1.0 annot-version=v1.0 ATGAGTAATCTCCCTACACTTTGCCGCCCTCAAGTTCTGTTCGCTTCCATCATTTGCTTCAGGCACCACCAGCCGCGTTCTAGCGTTAGGGTTTTCTTTC AAAGCCGCGATTCCAGTCAGCATACTTCTTCTTCGTCTTCTTTCTCGCCGTGGCTCCATAGAAATGACGATCCAATGTTCCGTGCTAACCACAAGAGGAG CGTCATGATGTCCGCGTCCAATTGGAAGGATCAGATGTCTCCTTATGAAACCCTAGAATTGGAAGGGGATGCCAACGAAGAGGATATTAAGGTTGCTTAC AGACGCTTGGCGAAGTTCTATCATCCAGATGTCTACGATGGGAGAGGCACCTTGGGGAAAGGTGAAACTGCAGAAGCTAGATTCATCAGGATCCAAGCTG CATATGAGTTGTTGATGGATCAGGGTAAGAGGAAGCAGTATGACATGGACAACAGAGACAGCCCGATGAAGGCATCACAAGCATGGATGGACTGGCTTAT GAAGAAGCGAAAGGCTTTCGATCAACGTGGGGATATGGCTATTGCTGCATGGGCTGAACAACAACAGCGTGAGATAAATCTCCGTGCACGCCAGCTTTCT CGTTCAAAGATTGATCCAGACGAAGAGAGAAGAATCCTGCGGAGGGAGAAGAAAGCATCTGCAGAGTACTTCAGTACGACCCTGAAGCGTCATACTCTGA TCCTGAAGAAGAGGGATCTGATGAGGAAGAAAGAAGAAGATGACAAGAAAAATCTCATCAGTCAGCTTCTTGCCGCAGAAGGTCTGGAGCTCGACACCAC GGACAACGATGGTGGAACCCAGTAA
AA sequence Show only first row Show all	>Lus10012702 pacid=23148209 polypeptide=Lus10012702 locus=Lus10012702.g ID=Lus10012702.BGIv1.0 annot-version=v1.0 MSNLPTLCRPQVLFASIICFRHHQPRSSVRVFFQSRDSSQHTSSSSSFSPWLHRNDDPMFRANHKRSVMMSASNWKDQMSPYETLELEGDANEEDIKVAY RRLAKFYHPDVYDGRGTLGKGETAEARFIRIQAAYELLMDQGKRKQYDMDNRDSPMKASQAWMDWLMKKRKAFDQRGDMAIAAWAEQQQREINLRARQLS RSKIDPDEERRILRREKKASAEYFSTTLKRHTLILKKRDLMRKKEEDDKKNLISQLLAAEGLELDTTDNDGGTQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10012702 [exp]	0	1
AT1G77930			Chaperone DnaJ-domain superfam...		Lus10001296 [exp]	1.0	0.9763
AT3G10970			Haloacid dehalogenase-like hyd...		Lus10034213 [exp]	1.7	0.9032
AT5G61670			unknown protein		Lus10016713 [exp]	2.0	0.9362
AT1G13990			unknown protein		Lus10037142 [exp]	2.4	0.8920
AT2G33590			NAD(P)-binding Rossmann-fold s...		Lus10024138 [exp]	2.6	0.8909
AT1G13990			unknown protein		Lus10036787 [exp]	3.5	0.8941
AT1G50440			RING/FYVE/PHD zinc finger supe...		Lus10034832 [exp]	4.0	0.8885
AT3G27110			Peptidase family M48 family pr...		Lus10032044 [exp]	6.6	0.8818
AT1G01230			ORMDL family protein (.1)		Lus10005980 [exp]	7.1	0.8828
AT3G05345			Chaperone DnaJ-domain superfam...		Lus10004485 [exp]	8.5	0.8656

Compare expression of checked genes

Lus10012702 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.