Plant FIBer expression Database

Lus10012704 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001299
[exp]
237 / 2e-80 AT2G14095 53 / 2e-08 unknown protein
Lus10001300
[exp]
108 / 4e-29 AT2G14095 52 / 7e-08 unknown protein
Lus10026715
[exp]
88 / 1e-21 ND /
Lus10025501
[exp]
62 / 2e-12 ND /
Lus10025500
[exp]
59 / 2e-10 AT2G14095 64 / 7e-12 unknown protein
Lus10026713
[exp]
42 / 2e-05 ND 37 / 8e-04
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G101600
[exp]
72 / 2e-15 ND /
Potri.002G101500
[exp]
67 / 8e-14 AT2G14095 55 / 5e-09 unknown protein
Potri.017G050000
[exp]
56 / 5e-10 AT2G14095 105 / 6e-28 unknown protein
PFAM info
Representative CDS sequence
>Lus10012704 pacid=23148178 polypeptide=Lus10012704 locus=Lus10012704.g ID=Lus10012704.BGIv1.0 annot-version=v1.0
ATGTTCTCCGCCGCCACAACGGCCGCCGCTTGGGTTGACTTTTCGACTCGTCCGGAAGTCAAACTCTCTCATCGGTATCCGCGCATCTTCGGGAGTAACT
TCTCAACCACATGTTTCAGATTCCTCCGACGTTCGCATCAGCGACCGATGAAAATGATCGTCAGCGTTCGTAGCTCGGTGGTGCCCGGAGGAGTTCCTCT
TCCTCCGCCGCCGCCGTCGTCCGGTGGTGCTAATTCACTTCCTTCTTGGAAAAAGTGGGTAGTGGGTGTTGTGCTATCGATTCTGCTGCCATCTTGCCGT
TACAAGTTGTGGTCGTTGTTTAAGGATCGGGTAGACACGGCGGTGGAGACGGTGGAGATGATAACGGACATCGTGGAAGACGTGGCGGGGCAAGTTGAGA
AGTTAGCCGACGACATCGGAAACGGTTTGCCGGAAGGTAAACTGAAAGATGCCCTTGAAAGATTAGAAGAAGCCGCCGATAGATTGGATAAGAGTGCTGA
GCTCGCCGGAGATGTCATTGATAAGGTAATTTAG
AA sequence
>Lus10012704 pacid=23148178 polypeptide=Lus10012704 locus=Lus10012704.g ID=Lus10012704.BGIv1.0 annot-version=v1.0
MFSAATTAAAWVDFSTRPEVKLSHRYPRIFGSNFSTTCFRFLRRSHQRPMKMIVSVRSSVVPGGVPLPPPPPSSGGANSLPSWKKWVVGVVLSILLPSCR
YKLWSLFKDRVDTAVETVEMITDIVEDVAGQVEKLADDIGNGLPEGKLKDALERLEEAADRLDKSAELAGDVIDKVI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G14095 unknown protein Lus10012704
[exp]
0 1
AT2G23790 Protein of unknown function (D... Lus10016799
[exp]
7.7 0.9494
AT4G09460 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) Lus10000411
[exp]
9.2 0.9339
Lus10026056
[exp]
13.0 0.9404
AT3G02040 AtGDPD1, SRG3 Glycerophosphodiester phosphod... Lus10032006
[exp]
13.3 0.9435
AT1G51660 ATMKK4, ATMEK4 ARABIDOPSIS THALIANA MITOGEN-A... Lus10023664
[exp]
14.0 0.9220
AT2G36950 Heavy metal transport/detoxifi... Lus10022617
[exp]
16.0 0.9433
AT1G11260 ATSTP1, STP1 sugar transporter 1 (.1) Lus10042516
[exp]
16.1 0.9482
AT5G66590 CAP (Cysteine-rich secretory p... Lus10016787
[exp]
17.4 0.9151
AT3G47570 Leucine-rich repeat protein ki... Lus10030903
[exp]
17.5 0.9150
AT2G23755 unknown protein Lus10019660
[exp]
19.0 0.9379

Lus10012704 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.