Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16750 1086 / 0 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) AT5G25150 95 / 9e-20 TAF5 TBP-associated factor 5 (.1) AT5G52820 89 / 3e-18 WD-40 repeat family protein / notchless protein, putative (.1) AT3G49660 87 / 4e-18 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 88 / 5e-18 PRL1 pleiotropic regulatory locus 1 (.1) AT3G21540 86 / 5e-17 transducin family protein / WD-40 repeat family protein (.1) AT1G73720 84 / 1e-16 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT1G61210 84 / 3e-16 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 84 / 4e-16 Transducin/WD40 repeat-like superfamily protein (.1) AT3G16650 82 / 4e-16 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001301 [exp] 1541 / 0 AT5G16750 1159 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Lus10024447 [exp] 94 / 2e-19 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10003487 [exp] 90 / 4e-19 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033802 [exp] 93 / 6e-19 AT3G21540 914 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10012475 [exp] 92 / 8e-19 AT3G21540 1094 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10007449 [exp] 89 / 6e-18 AT5G25150 957 / 0.0 TBP-associated factor 5 (.1) Lus10021059 [exp] 88 / 1e-17 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 87 / 2e-17 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10006511 [exp] 86 / 4e-17 AT4G15900 753 / 0.0 pleiotropic regulatory locus 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G079600 [exp] 1169 / 0 AT5G16750 1186 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Potri.019G047300 [exp] 745 / 0 AT5G16750 794 / 0.0 TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1) Potri.006G263400 [exp] 94 / 2e-19 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.018G020200 [exp] 93 / 4e-19 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.005G148500 [exp] 88 / 1e-18 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G012800 [exp] 89 / 4e-18 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.006G121100 [exp] 87 / 3e-17 AT3G21540 1246 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.002G051900 [exp] 82 / 9e-17 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 82 / 1e-16 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 83 / 4e-16 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat CL0186 [flax] [poplar] PF08625 [flax] [poplar] Utp13 Utp13 specific WD40 associated domain
Representative CDS sequence Show only first row Show all	>Lus10012706 pacid=23148231 polypeptide=Lus10012706 locus=Lus10012706.g ID=Lus10012706.BGIv1.0 annot-version=v1.0 ATGTCTGCTCTGCAACCGAAGAAGAACTACCGTTGTGTGCCAACGCTTCAGCAGGTGTATACTGGTGGCCCGCTTGTGGTGTCTTCGGATGGCTCATTCA TCGCATGTGCTTGTGGCGAATCCATCAAGATTGTCGATTCCGTTGATTTCTCAATTAAAGGGAGCATTGAGGAAGGGAACGACGAGGCTGTGACGGCCCT AACACTTAGCCCTGATGACAAACTGCTTTTTTCTGCTGGCCACAGCAGGCAAATCAGGGTTTGGAACTTATCCACTTTAAAGTGTGAGCGGTCTTGGAAG GGCCATGATGGTCCAGTTATGACCATGGCTTGCCATGCTTCTGGTGGATTGCTTGCAACTGCAGGATCTGATAGGAAAGTTCTTGTATGGGATGTTGATG GCCATTTCTGTACTCATTACTTCAAAGGACATAAGGGGGTTGTCACTTGTATTATGTTCCATCCTGATCCGAATCAATCTCTTCTTTTTTCTGGAAGTGA CGATGCAACTGTACGAGTGTGGGATCTTCTTACGAAGAAGTGTGTAGCGACATTGGATAAACATTTCTCAACTGTGACATCTATGGCAGTATCTGAAGAT GGCCGGACATTGCTTACTGCTGGAAGAGATAAGGTGAGGAAGACTTTGGCTTTGTGGCCGGACATCACCACAAAGTTAAAGCCAGTTATTGTCGTGAATG TGTGGGACCTAAATGATTTTACCTGCAAGACAACTGTACTTGCATATGAAGTGTTGGAAGCTTTATCTATAATTCGTTCCGGGACGCTGTTTTCTTCATT TCTGGGTGCACTCAATCAGCGTAATGGGAAAAGCACAACTGATACATCAGGAATCCATTTTGTGACTGTTGGTGAACGTGGCATTGTACGCGTATGGAGT TCTGAACGTTCAACTTGTTTGTATGAGCATAAGTACTCTGATGTCACAGTCACCTCAGACATTGATGATGATCAATCAAGAAGAGGCTTAACTGGTGTTG TTGCTCTTCCCAATGACCAAGGATTGCTTTCTGTTACGGCTGATCAGCAGTTTCTATTCTACTCTCCGACTTCTGAAGGAGAGTTGGTCTTAAGTAAGAG ACTAGTTGGGTACAATGAGGAAATACTGGACATGAAATTTTTAGGCGAAGAGGAAAGTTTCCTCGCTGTTGCTACCAATCTTGAACAGGTTCGAGTTTAT GACTTAGCATCTATGTCATGCTCCTATGTTTTGTCAGGTCACGCTGAGATTGTTTTATGTCTTGATACTTGCACATTAAGTTGTGGGAAGGTACTTGTTG CAACTGGAAGCAAGGACAACACTGTGAGGTTGTGGGACACGGTAAGCCGGAAATGTGTTGGTATTGGCAAGGGTCACATGGGAGGCATTGGCGCTGTAGC ATTTTCGAAGAAGGAGAAAAATTTCCTTGTTAGTGCCAGTAGAGGCTTCATAGACGTGATAATAAACTGGGAAGCTAATCAATTTATTCCTTCTGCTAGT GATCGTACGATTAAGGTGTGGAGTTTCGACGATATCTCATATGATGGTGACGAACCAACTAGCTTGAAAGCCAAAGCAGTGGTTGCTGCCCATGATAAAG ATATAAATTCTCTGGCTGTTGCACCAAATGATCGTTTGGTGTGCACTGGTTCTCAGGACCGAACTGCTCGTGTGTGGAGGTTACCAGATCTGGTCTCAGT GGTGGAATTCAAAGGTCACAAACGAGGAATTTGGTCTGTTGAGTTTTCACCGGTCGATCCATGTGTCATAACAGCATCAGGTGATAAGACCATAAAGATA TGGAGCATAGCTGATGGTACCTGCAAAATGACATTTGAAGGGCACACGTCTAGTGTGTTGAGAGCGTCATTTATTACTCGTGGCACCCAGTTTGTTTCCT CTGGAGCTGATGGGTTGGTCAAACTATGGACTGTTAGAACGAACGAATGCATCGCAACATATGATCAACACGAGGACAAGGTTTGGGCCCTGGCTATCGG GAAGAAGACTGAAATGTTTGCAACTGGCGGCGGTGATGCAGTCGTTAATCTATGGTACGATTCAACCGCTTCTGACAAGGAGGACGCATTCCGTGAAGAG GAGGAACGCGTACTGAAAGGCCAAACATTGGAGAATGCTATACTGGACAACGATTACTCAAAAGCCATTCAACTCGCTTTTGAACTCGACAGACCTCGCA AACTCTTCGAGTTGTTTTCTCAACTCTGCAGGAAGAGGGAAGCTGGGGGGACCAACCATATCGAGAAAGCCGTGTGCAGTCTTGGCAAGGACCAGTTGCG CTTACTCTTCGAGTACGCCCGCGAATGGAACACGAAACCGAAGATGTGCCACATAGCACAGCTGGTTCTGTTTCAGGTATTCAGCAACATCTCTCCGTCG ACGATCCTCGAGATCAAAGGTATCAACGAGATACTGGAGGGGCTCATTCCTTATACGCAGAGGCACTTCACCAGGATAGACCGTGCTGTAAGGAGTACGT ATTTGGTAGACTATTCTCTGATCGGAATGGGGGCGGTTGATGCGGATGTCGATGCGAAAGACGGTAGAGATGAAGCGGTTCGTGACGATGGCGAAGCATT GGTGGAGACGGGCACGTCGAAGAAGAGGAAATCGTCAACTAAATCTAGCAAGACGAAAAGTAAGAAGGTGAAGACAGTAGCTCTGGAGGCTTAA
AA sequence Show only first row Show all	>Lus10012706 pacid=23148231 polypeptide=Lus10012706 locus=Lus10012706.g ID=Lus10012706.BGIv1.0 annot-version=v1.0 MSALQPKKNYRCVPTLQQVYTGGPLVVSSDGSFIACACGESIKIVDSVDFSIKGSIEEGNDEAVTALTLSPDDKLLFSAGHSRQIRVWNLSTLKCERSWK GHDGPVMTMACHASGGLLATAGSDRKVLVWDVDGHFCTHYFKGHKGVVTCIMFHPDPNQSLLFSGSDDATVRVWDLLTKKCVATLDKHFSTVTSMAVSED GRTLLTAGRDKVRKTLALWPDITTKLKPVIVVNVWDLNDFTCKTTVLAYEVLEALSIIRSGTLFSSFLGALNQRNGKSTTDTSGIHFVTVGERGIVRVWS SERSTCLYEHKYSDVTVTSDIDDDQSRRGLTGVVALPNDQGLLSVTADQQFLFYSPTSEGELVLSKRLVGYNEEILDMKFLGEEESFLAVATNLEQVRVY DLASMSCSYVLSGHAEIVLCLDTCTLSCGKVLVATGSKDNTVRLWDTVSRKCVGIGKGHMGGIGAVAFSKKEKNFLVSASRGFIDVIINWEANQFIPSAS DRTIKVWSFDDISYDGDEPTSLKAKAVVAAHDKDINSLAVAPNDRLVCTGSQDRTARVWRLPDLVSVVEFKGHKRGIWSVEFSPVDPCVITASGDKTIKI WSIADGTCKMTFEGHTSSVLRASFITRGTQFVSSGADGLVKLWTVRTNECIATYDQHEDKVWALAIGKKTEMFATGGGDAVVNLWYDSTASDKEDAFREE EERVLKGQTLENAILDNDYSKAIQLAFELDRPRKLFELFSQLCRKREAGGTNHIEKAVCSLGKDQLRLLFEYAREWNTKPKMCHIAQLVLFQVFSNISPS TILEIKGINEILEGLIPYTQRHFTRIDRAVRSTYLVDYSLIGMGAVDADVDAKDGRDEAVRDDGEALVETGTSKKRKSSTKSSKTKSKKVKTVALEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Lus10012706 [exp]	0	1
AT1G74040		IPMS2, MAML-3, ...	SOPROPYLMALATE SYNTHASE 2, 2-i...		Lus10019573 [exp]	1.0	0.9629
AT4G19710		AK-HSDHII, AK-H...	aspartate kinase-homoserine de...		Lus10030339 [exp]	1.4	0.9609
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Lus10001301 [exp]	2.8	0.9464
AT1G29880			glycyl-tRNA synthetase / glyci...		Lus10029203 [exp]	4.2	0.9428
AT5G57990		UBP23	ubiquitin-specific protease 23...		Lus10036607 [exp]	4.6	0.9368
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10042065 [exp]	5.5	0.9460
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Lus10018035 [exp]	6.2	0.9476
AT3G23940			dehydratase family (.1.2)		Lus10034822 [exp]	10.4	0.9302
AT3G02320			N2,N2-dimethylguanosine tRNA m...		Lus10020290 [exp]	10.8	0.9296
AT3G16310			mitotic phosphoprotein N' end ...		Lus10011431 [exp]	11.8	0.9247

Compare expression of checked genes

Lus10012706 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.