Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64610 751 / 0 HAM1 histone acetyltransferase of the MYST family 1 (.1) AT5G09740 745 / 0 C2H2ZnF HAM2 histone acetyltransferase of the MYST family 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001302 [exp] 877 / 0 AT5G64610 775 / 0.0 histone acetyltransferase of the MYST family 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G089500 [exp] 783 / 0 AT5G64610 748 / 0.0 histone acetyltransferase of the MYST family 1 (.1) Potri.005G171700 [exp] 776 / 0 AT5G64610 751 / 0.0 histone acetyltransferase of the MYST family 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF01853 [flax] [poplar] MOZ_SAS MOZ/SAS family CL0049 [flax] [poplar] Tudor PF11717 [flax] [poplar] Tudor-knot RNA binding activity-knot of a chromodomain
Representative CDS sequence Show only first row Show all	>Lus10012707 pacid=23148161 polypeptide=Lus10012707 locus=Lus10012707.g ID=Lus10012707.BGIv1.0 annot-version=v1.0 ATGAACAGATCCAAGCTCAAAGCAAGTCCCATTAATGGCCCAAAAATAGTAACCGCCGATTCCTACTCACAGCTTCCATCTCCCCTCCTTCAGTTCCAAG GACAAAACACGATGGGTTCGATTGACACGCCACCACGTACAGATAACGCAGCGTCGGTGCCGGCTTGCACCAACGGCAACGATTCAATCGTTGAAGAGAA GATACTCGAAGGGATGCCTTCCTTGGCAGACACCACGGCTCGTCCGGAAACTGAGGCTCCGAGGAAGAGGAAATCTAGTCTCCTCCCGTTGGAGGTCGGT ACTAGGGTTATGTGCCGCTGGAGAGACGGCAAGTATCATCCCGTCAAAGTCATCGAGCGGCGGAAGGTTTCTTACTCCGATCCCAATGATTATGAGTACT ACGTTCATTACACCGAGTTTAACAGGAGACTTGACGAGTGGGTGAAGCTTGAACAACTTGATCTTGAATCTGTTGAAGCTGTTGTTGACGAGAAAGTGGA GGATAAGGTAACGAGCTTGAAAATGACTCGGCATCAGAAAAGGAAGATTGATGAGACTCATACGGAGGGACATGAGGAACTTGACGCTGCCAGCTTGAGG GAGCACGAGGAATTTACAAAAGTGAAAAACATAGCTACGATAGAACTTGGAAGATATGAGATTGAGACGTGGTATTTTTCGCCCTTCCCACCGGAATACA ATGACTGTTTGAAGCTCTACTTTTGTGAGTTTTGCCTGAATTTCATGAAGCGTAAAGAGCAGCTTCAAAGGCACATGAGGAAGTGTGATCTAAAGCATCC CCCTGGTGACGAGATATACAGAAGCGGTACATTATCGATGTTTGAGGTCGATGGTAAAAAGAACAAGGTCTATGGGCAAAATTTGTGCTACCTGGCAAAG CTGTTTCTTGATCACAAAACTCTCTACTACGATGTTGACCTGTTTTTGTTTTATGTGCTGTGTGAATGTGATGATCGGGGGTGCCATATGGTTGGTTATT TTTCGAAGGAAAAACACTCCGAGGATTCCTACAATTTGGCTTGTATCCTCACTCTTCCTCCTTACCAAAGGAAAGGCTATGGGAAATTTCTAATAGCTTT CTCGTATGAACTCTCCAAAAAAGAAGGTAAGGTTGGAACACCTGAAAGACCTCTTTCCGACCTAGGCCTGTTAAGCTATAGAGGATACTGGACCAGGGTT CTTCTAGACATCTTGAAAAAGCACAAAGGCAACATCTCTATCAAGGAACTAAGCGACATGACAGCAATTAGAGCGGAAGATATACTGACGACGCTACAGA GCCTTGAGTTGATCCAGTACAGGAAAGGACAACATGTGATATGTGCCGATCCAAAAGTATTGGATCGCCATCTAAAGGCTGCTGGGCGCGGTGGTCTCGA TGTTGATGTTAGCAAGTTGATCTGGACGCCGTATAAGGAACAGGGTTAG
AA sequence Show only first row Show all	>Lus10012707 pacid=23148161 polypeptide=Lus10012707 locus=Lus10012707.g ID=Lus10012707.BGIv1.0 annot-version=v1.0 MNRSKLKASPINGPKIVTADSYSQLPSPLLQFQGQNTMGSIDTPPRTDNAASVPACTNGNDSIVEEKILEGMPSLADTTARPETEAPRKRKSSLLPLEVG TRVMCRWRDGKYHPVKVIERRKVSYSDPNDYEYYVHYTEFNRRLDEWVKLEQLDLESVEAVVDEKVEDKVTSLKMTRHQKRKIDETHTEGHEELDAASLR EHEEFTKVKNIATIELGRYEIETWYFSPFPPEYNDCLKLYFCEFCLNFMKRKEQLQRHMRKCDLKHPPGDEIYRSGTLSMFEVDGKKNKVYGQNLCYLAK LFLDHKTLYYDVDLFLFYVLCECDDRGCHMVGYFSKEKHSEDSYNLACILTLPPYQRKGYGKFLIAFSYELSKKEGKVGTPERPLSDLGLLSYRGYWTRV LLDILKKHKGNISIKELSDMTAIRAEDILTTLQSLELIQYRKGQHVICADPKVLDRHLKAAGRGGLDVDVSKLIWTPYKEQG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64610		HAM1	histone acetyltransferase of t...		Lus10012707 [exp]	0	1
AT1G03910			unknown protein		Lus10027731 [exp]	4.5	0.6831
AT2G24820		AtTic55, TIC55-...	translocon at the inner envelo...		Lus10026246 [exp]	22.4	0.6763
AT2G01150		RHA2B	RING-H2 finger protein 2B (.1)		Lus10007936 [exp]	25.8	0.6645
AT1G55000			peptidoglycan-binding LysM dom...		Lus10029925 [exp]	27.9	0.6706
AT2G29590			Thioesterase superfamily prote...		Lus10040701 [exp]	47.2	0.5325
AT1G06210			ENTH/VHS/GAT family protein (....		Lus10022922 [exp]	50.6	0.6188
AT1G07510		FTSH10	FTSH protease 10 (.1)		Lus10004972 [exp]	51.7	0.6128
AT5G10990			SAUR-like auxin-responsive pro...		Lus10026297 [exp]	53.7	0.5588
AT2G32710		ICK7, ACK2, KRP...	KIP-RELATED PROTEIN 4, INTERAC...		Lus10032611 [exp]	54.5	0.6115
AT1G03750		SWI2, SNF2, CHR...	CHROMATIN REMODELING 9, switch...		Lus10033669 [exp]	57.4	0.5945

Compare expression of checked genes

Lus10012707 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.