Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65980 469 / 2e-165 Auxin efflux carrier family protein (.1) AT2G17500 457 / 1e-160 Auxin efflux carrier family protein (.1.2.3.4) AT1G76520 333 / 4e-112 Auxin efflux carrier family protein (.1.2) AT1G20925 333 / 7e-111 Auxin efflux carrier family protein (.1) AT1G76530 279 / 1e-90 Auxin efflux carrier family protein (.1) AT5G01990 203 / 4e-61 Auxin efflux carrier family protein (.1) AT1G71090 201 / 9e-60 Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001303 [exp] 753 / 0 AT5G65980 491 / 6e-174 Auxin efflux carrier family protein (.1) Lus10035978 [exp] 557 / 0 AT5G65980 486 / 2e-172 Auxin efflux carrier family protein (.1) Lus10016688 [exp] 531 / 0 AT2G17525 655 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10025166 [exp] 339 / 3e-114 AT1G76520 455 / 8e-160 Auxin efflux carrier family protein (.1.2) Lus10004287 [exp] 324 / 6e-108 AT1G20925 430 / 1e-148 Auxin efflux carrier family protein (.1) Lus10016046 [exp] 285 / 2e-92 AT1G20925 392 / 2e-133 Auxin efflux carrier family protein (.1) Lus10035610 [exp] 186 / 1e-54 AT5G01990 605 / 0.0 Auxin efflux carrier family protein (.1) Lus10003240 [exp] 181 / 8e-51 AT5G01990 610 / 0.0 Auxin efflux carrier family protein (.1) Lus10019229 [exp] 177 / 1e-48 AT5G23490 667 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G099300 [exp] 510 / 0 AT2G17500 475 / 2e-167 Auxin efflux carrier family protein (.1.2.3.4) Potri.002G003500 [exp] 347 / 2e-117 AT1G20925 499 / 4e-176 Auxin efflux carrier family protein (.1) Potri.001G456300 [exp] 347 / 5e-117 AT1G76520 382 / 5e-131 Auxin efflux carrier family protein (.1.2) Potri.001G456400 [exp] 332 / 2e-111 AT1G76520 419 / 1e-145 Auxin efflux carrier family protein (.1.2) Potri.011G145600 [exp] 319 / 2e-106 AT1G76520 368 / 2e-125 Auxin efflux carrier family protein (.1.2) Potri.003G108100 [exp] 312 / 2e-103 AT1G76520 398 / 4e-137 Auxin efflux carrier family protein (.1.2) Potri.011G145700 [exp] 295 / 7e-97 AT1G76520 396 / 2e-136 Auxin efflux carrier family protein (.1.2) Potri.001G125501 [exp] 226 / 1e-69 AT1G76520 266 / 6e-85 Auxin efflux carrier family protein (.1.2) Potri.016G141700 [exp] 197 / 5e-59 AT5G01990 622 / 0.0 Auxin efflux carrier family protein (.1) Potri.006G112200 [exp] 194 / 7e-58 AT5G01990 602 / 0.0 Auxin efflux carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10012708 pacid=23148210 polypeptide=Lus10012708 locus=Lus10012708.g ID=Lus10012708.BGIv1.0 annot-version=v1.0 ATGGGTTTCTGGACTCTACTTCAGGTGGCTTCAATGCCTGTTATTCAAGTCCTTATTGTCGGTGTTCTGGGTGCAATCCTGGCTACTGATTACATCAACG TCCTCCATGCTGATGCTAGGAAATACTTGAACAAGGTTGTGTTCACGGTGTTCACACCGTCGCTTATGTTTGCGATCCTGTCGAAAACGGTTACATTCGG GGACATTGTATCCTGGTGGTTTATGCCGGTTAACATCGGTCTGACCATGATATTCGGAGGGCTTCTCGGATGGGTTGTTGTGAAATTGGTGCGGCCAAAG CCACATCTTGAAGGTCTTCTGATTGCTACTTGTGCCACAGGAAACTATGGGAATCTGTTGCTGATAGTAGTGCCAGCAATCTGCAAAGAAGATGGTACCC CATTTGGGGATCATGCCACTTGCAGCTCCATTGGCCTCTCTTATGCTTCCTTCTCTGCTGCGCTGGGGAGTATCTATATCTGGACATGTGCATACCAACT GGTCCGGAAATCAGCAATCAAATTCAAGGAACTGAAGAATGAGGAAGATGCTGCTGCTTCATCCAAACTACCAAACCCTGATATTGAGGGAACTCAACTT CTCAAGGGAGACCATGAAGAAGCATTGCCAGTAGTTGAGATTGGAGAAGCCAGCAAGCCAATGGGAATTGTTGGAGTGCTGCATCAGATACTTCATGAGC TCACTGCTCCACCCACACTTTCCTCGATACTTGGTTTCGTGTTCGGAGCTACACCGTTCCTTAGGAACTTGATAGTAGGCGATGACGCACCGTTGCGAGT GGTCCAGAACTCCATTGAGCTACTTGGAGATGGGACAATACCTTCCATTACTCTTATACTAGGAGGGAACCTAACACAAGGTTTGCGGTCTTCGAGCATC AAACCACTGATGATTGTTGGAGTAGTATGCGTCCGATATGTGTTCCTGCCGGTGATCGGGATATGTGTGATCAAAGCAGCAGCAAGTATAGGGCTGCTCC CTTCTGATCCACTGTTTGCCTATGTCCTTATGCTCCAATACAGCATCCCTCCAGCCATGAATATCGGTACGATGACGCAGCTATTTGGTGTTGCTCAAGA AGAGTGCTCAGTTATCTTCTTGTGGACTTACTTGTTTGCTGCCGTAGCCCTTACTCTCTGGTCTACTGTCTATTTGTGGATGTTGTCCTGA
AA sequence Show only first row Show all	>Lus10012708 pacid=23148210 polypeptide=Lus10012708 locus=Lus10012708.g ID=Lus10012708.BGIv1.0 annot-version=v1.0 MGFWTLLQVASMPVIQVLIVGVLGAILATDYINVLHADARKYLNKVVFTVFTPSLMFAILSKTVTFGDIVSWWFMPVNIGLTMIFGGLLGWVVVKLVRPK PHLEGLLIATCATGNYGNLLLIVVPAICKEDGTPFGDHATCSSIGLSYASFSAALGSIYIWTCAYQLVRKSAIKFKELKNEEDAAASSKLPNPDIEGTQL LKGDHEEALPVVEIGEASKPMGIVGVLHQILHELTAPPTLSSILGFVFGATPFLRNLIVGDDAPLRVVQNSIELLGDGTIPSITLILGGNLTQGLRSSSI KPLMIVGVVCVRYVFLPVIGICVIKAAASIGLLPSDPLFAYVLMLQYSIPPAMNIGTMTQLFGVAQEECSVIFLWTYLFAAVALTLWSTVYLWMLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65980			Auxin efflux carrier family pr...		Lus10012708 [exp]	0	1
AT5G45290			RING/U-box superfamily protein...		Lus10016428 [exp]	3.0	0.9600
AT2G39415			F-box family protein (.1)		Lus10042304 [exp]	3.5	0.9506
					Lus10002693 [exp]	3.7	0.9504
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10020498 [exp]	4.7	0.9575
AT4G37980		ELI3-1, ATCAD7	CINNAMYL-ALCOHOL DEHYDROGENASE...		Lus10023268 [exp]	4.9	0.9570
AT1G16310			Cation efflux family protein (...		Lus10009598 [exp]	6.7	0.9510
AT2G36890	MYB	BIT1, ATMYB38, ...	REGULATOR OF AXILLARY MERISTEM...		Lus10023002 [exp]	9.8	0.9493
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034847 [exp]	10.2	0.9527
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10025991 [exp]	10.4	0.9443
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10033392 [exp]	10.6	0.9306

Compare expression of checked genes

Lus10012708 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.