Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51490 704 / 0 TMT3 tonoplast monosaccharide transporter3 (.1.2) AT4G35300 635 / 0 TMT2 tonoplast monosaccharide transporter2 (.1.2.3.4.5) AT1G20840 591 / 0 AtTMT1, TMT1 tonoplast monosaccharide transporter1 (.1) AT1G30220 134 / 7e-33 ATINT2 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) AT4G16480 132 / 3e-32 ATINT4 inositol transporter 4 (.1) AT2G35740 131 / 7e-32 ATINT3 nositol transporter 3 (.1) AT4G36670 123 / 1e-29 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G20780 123 / 2e-29 AtPLT4 Major facilitator superfamily protein (.1) AT1G05030 121 / 1e-28 Major facilitator superfamily protein (.1) AT5G16150 118 / 1e-27 PGLCT, GLT1 GLUCOSE TRANSPORTER 1, plastidic GLC translocator (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010886 [exp] 1182 / 0 AT3G51490 822 / 0.0 tonoplast monosaccharide transporter3 (.1.2) Lus10022988 [exp] 660 / 0 AT4G35300 1095 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10001386 [exp] 640 / 0 AT4G35300 1074 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10030726 [exp] 640 / 0 AT4G35300 962 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10001385 [exp] 638 / 0 AT4G35300 1071 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10013208 [exp] 610 / 0 AT4G35300 954 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10022989 [exp] 577 / 0 AT4G35300 977 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Lus10028118 [exp] 136 / 2e-33 AT1G30220 893 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1) Lus10042820 [exp] 136 / 2e-33 AT1G30220 890 / 0.0 ARABIDOPSIS THALIANA INOSITOL TRANSPORTER 2, inositol transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G098900 [exp] 747 / 0 AT4G35300 759 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.002G006200 [exp] 663 / 0 AT4G35300 904 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.009G168500 [exp] 648 / 0 AT4G35300 934 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.005G255400 [exp] 647 / 0 AT4G35300 915 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.004G207100 [exp] 639 / 0 AT4G35300 965 / 0.0 tonoplast monosaccharide transporter2 (.1.2.3.4.5) Potri.016G010600 [exp] 130 / 1e-31 AT4G16480 825 / 0.0 inositol transporter 4 (.1) Potri.006G015300 [exp] 129 / 3e-31 AT4G16480 788 / 0.0 inositol transporter 4 (.1) Potri.006G015200 [exp] 127 / 2e-30 AT4G16480 811 / 0.0 inositol transporter 4 (.1) Potri.017G032200 [exp] 125 / 2e-30 AT2G43330 743 / 0.0 inositol transporter 1 (.1) Potri.007G126800 [exp] 124 / 1e-29 AT2G43330 710 / 0.0 inositol transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00083 [flax] [poplar] Sugar_tr Sugar (and other) transporter
Representative CDS sequence Show only first row Show all	>Lus10012709 pacid=23148153 polypeptide=Lus10012709 locus=Lus10012709.g ID=Lus10012709.BGIv1.0 annot-version=v1.0 ATGAGAGGAGCTGTGCTCGTAGCCGTCGCCGCTACTATCGGGAACTTCTTGCAAGGATGGGACAATTCCACCATTGCAGGGGCGGTAATATACATAAAGA AGGAATTCAAATTAGAATCCCAGCCAACGGTGGAAGGCCTAATAGTGGCAATGTCGTTGGTCGGAGGGACATTCATCACGACATTCTCCGGTCCGGTGGC CGACAAGTACGGCCGGAGGCCGATGCTGATCCTCTCCTCGCTCTGTTACCTGATCGGCAGCTTAGTCATGCTATGGTCTCCTAACGTCCATACTTTGCTA GCAGCGAGGCTTCTCGACGGATTTGGGATCGGTCTCGCTGTCACCCTGGTCCCCCTTTACATCTCCGAGACTGCTCCCTCGGAGATCAGAGGGACGCTGA ACACTCTCCCGCAATTTCTGGGTTCGGGAGGGATGTTCTTCTCGTACATCATGGTGTTCTGCATGTCGCTGCAGGATTCACCTAATTGGAGGGTGATGTT GGGAGTTCTTGCTATTCCTTCGCTCCTTTTCCTCGTTGTCGCTGTTCTTTTCTTGCCGGAGTCCCCGAGGTGGCTCGTTTGTAAGGGGAGGTTGGATGAG GCTAAGTTGGTCCTGCAGAGGCTTCGCGGCAGGGACGACGTTGCAGGGGAGATGGCATTGCTACTGGAAGGACTTGGAGTGGGGAAAGACCCATCAATTG AAGAATACATCGTCGGGCCAGCCGACGGCGGCGACATCCAAGGCGAGGATAATACGGTGGAGAAAATGGGAGAAGTCCGATTGTACGGCGCGGAGGAAGG GGTTTCGTGGGTGGCGAAGCCGGTGACGGCAGGGCAGAGCTCTCTGGCCGTAGTATCAAGACAGGGGAGCTTAGCCAACCAGAACATCCCATTAATGGAT CCTCTCGTTACTCTCTTCGGAAGCGTCCATGAAAACAATCTCCCAACATCGTCGTCTATGATGGGCAGCATGAGGGGGAGCATGTTCTTCCCCACCTCCG GCAGCATGCTCAGCATGTTCACCGGCGGAAACAGAGCCACTGCCGGCGAACCGAATTGGGCCGACGAAGAGAGCCAGAGAGTCGACAGTCAGGAGGAGGA CAACGGAAATGCGGCTCCACTGCTGTATCCGTCCGGCGGGAGTAGCATGTTTGCTAGTGTGAGGAGGAATAGTAGTTTGTTCGCCGGCGGTGATGGCGGC GACGGAGTTGGGATCGGAGGAGGATGGCAGCTGGCTTATAAGTATCCACATGGGAAAAAGGACTGCGGATTGCAGAGAGTGTACCTTCACGGCGGGGCGG CGGCCGGGTCGAGACGGGGGTCGATGTTGTCGAGCGTGGGTCCGGGGATGGATGTAGCGACGGAGGAGTTTTCGCCGGCGGCGGCTCTTGTTAGCACGAC GGCGGTTTGTTCCAAGGAAATGCTCGGCGGCGGGAAGCCACAAGTTGGGCGGCGGGCGGAGAAGCAAGGCGGCGGCGGGGCTAGATTGGCTGATCTTTGT GAGCCGGGGGTTAAGCGGGCTTTGCTGGTCGGAGTTGTGCTTCAGTTTCTTCAACAGATATCGGGGATCAATGGGGTGTTGTACTATGCGCCGCAGATTC TGCAAGAGGTAGGGGTTTCAGTTCTTCTGTCGAGTCTAGGGTTGCGATCAGACTCTGCGTCGATCCTCATCAGCCTTTTCTCCACCATTGTTATGCTCCC CTGCATCATTGTTTCCATGAGGATCATGGACATCGCCGGTAGAAGGTCAATATTGCTGTACACAATCCCAGTCCTAGTGGTGGCCCTGTTCGCAATAGTG ATCAGCAGCATAGTAACCATGGGAGAAGTCCTTAGAGCCATAATATCCACCGGAGGAGTGGTGATCTACATGAGCGGTTTCGTCATGGGGTTCGGAGTCA TCCCGAACATCCTCTGCGCCGAGATCTTCCCCACCACTGCTCGCGGACTCTGCATCACCGTGTGTGCTCTCACTTACTGGATCATGAACATCATCGTCAC CTATTCGTCCCCGCTTCTCCTCAACAGCCTCGGCTTGGCCGGAGTTTTCACCATCTTCGGTGTCGGGTGTATGATCTCGTGGGTGTTCGTGTTCCTCAAA GTGCCCGAGACTAAAGGGATGCCTTTGGAAGTCATTTCCGAGTTCTTTGCTGCTGGTGCCTCCGTTCTTGATCGCCACAACTGA
AA sequence Show only first row Show all	>Lus10012709 pacid=23148153 polypeptide=Lus10012709 locus=Lus10012709.g ID=Lus10012709.BGIv1.0 annot-version=v1.0 MRGAVLVAVAATIGNFLQGWDNSTIAGAVIYIKKEFKLESQPTVEGLIVAMSLVGGTFITTFSGPVADKYGRRPMLILSSLCYLIGSLVMLWSPNVHTLL AARLLDGFGIGLAVTLVPLYISETAPSEIRGTLNTLPQFLGSGGMFFSYIMVFCMSLQDSPNWRVMLGVLAIPSLLFLVVAVLFLPESPRWLVCKGRLDE AKLVLQRLRGRDDVAGEMALLLEGLGVGKDPSIEEYIVGPADGGDIQGEDNTVEKMGEVRLYGAEEGVSWVAKPVTAGQSSLAVVSRQGSLANQNIPLMD PLVTLFGSVHENNLPTSSSMMGSMRGSMFFPTSGSMLSMFTGGNRATAGEPNWADEESQRVDSQEEDNGNAAPLLYPSGGSSMFASVRRNSSLFAGGDGG DGVGIGGGWQLAYKYPHGKKDCGLQRVYLHGGAAAGSRRGSMLSSVGPGMDVATEEFSPAAALVSTTAVCSKEMLGGGKPQVGRRAEKQGGGGARLADLC EPGVKRALLVGVVLQFLQQISGINGVLYYAPQILQEVGVSVLLSSLGLRSDSASILISLFSTIVMLPCIIVSMRIMDIAGRRSILLYTIPVLVVALFAIV ISSIVTMGEVLRAIISTGGVVIYMSGFVMGFGVIPNILCAEIFPTTARGLCITVCALTYWIMNIIVTYSSPLLLNSLGLAGVFTIFGVGCMISWVFVFLK VPETKGMPLEVISEFFAAGASVLDRHN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51490		TMT3	tonoplast monosaccharide trans...		Lus10012709 [exp]	0	1
AT2G46890			Protein of unknown function (D...		Lus10010291 [exp]	2.2	0.9361
AT2G46890			Protein of unknown function (D...		Lus10009861 [exp]	6.8	0.9104
AT2G35120			Single hybrid motif superfamil...		Lus10017133 [exp]	9.5	0.8907
AT5G61350			Protein kinase superfamily pro...		Lus10000562 [exp]	17.8	0.8986
AT3G18280			Bifunctional inhibitor/lipid-t...		Lus10013030 [exp]	21.7	0.8775
AT5G17820			Peroxidase superfamily protein...		Lus10013631 [exp]	25.5	0.8854
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Lus10030892 [exp]	26.5	0.8773
					Lus10004651 [exp]	27.9	0.8952
AT3G52790			peptidoglycan-binding LysM dom...		Lus10027407 [exp]	29.4	0.8761
AT2G03550			alpha/beta-Hydrolases superfam...		Lus10019885 [exp]	33.5	0.8946

Compare expression of checked genes

Lus10012709 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.