Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71070 555 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G39990 370 / 2e-125 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G15050 362 / 1e-122 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G15350 353 / 6e-119 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G27480 343 / 3e-115 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G03520 337 / 2e-113 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G03340 329 / 2e-109 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G24040 326 / 1e-108 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G03690 311 / 3e-103 UNE7 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G53100 306 / 1e-100 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010887 [exp] 766 / 0 AT1G71070 572 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10032189 [exp] 384 / 5e-131 AT5G15050 648 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10014495 [exp] 384 / 7e-131 AT5G15050 649 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10023687 [exp] 365 / 1e-123 AT3G24040 491 / 2e-173 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10011765 [exp] 362 / 1e-122 AT3G24040 491 / 4e-173 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10043324 [exp] 352 / 2e-118 AT3G15350 641 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10019477 [exp] 348 / 4e-117 AT3G15350 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10030084 [exp] 337 / 1e-112 AT5G15050 507 / 4e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10001076 [exp] 336 / 4e-112 AT5G15050 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G128000 [exp] 627 / 0 AT1G71070 574 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.010G114800 [exp] 604 / 0 AT1G71070 581 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.017G075600 [exp] 377 / 1e-128 AT5G15050 671 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G130300 [exp] 371 / 5e-126 AT5G15050 654 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.011G119600 [exp] 352 / 1e-118 AT3G15350 614 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.001G399500 [exp] 346 / 2e-116 AT3G15350 622 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.006G263000 [exp] 347 / 3e-116 AT2G37585 500 / 7e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G145500 [exp] 346 / 4e-116 AT1G03520 667 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.019G104600 [exp] 335 / 7e-112 AT4G03340 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G053800 [exp] 332 / 1e-110 AT3G24040 505 / 6e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF02485 [flax] [poplar] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Lus10012710 pacid=23148169 polypeptide=Lus10012710 locus=Lus10012710.g ID=Lus10012710.BGIv1.0 annot-version=v1.0 ATGGGAGTAGAGAGACGTTGGCTTTTCGTTCTTTTCTCAGCAGCATCCATTTCGCTCCTGTTTCTAGTAGTTTACTCCGGCTCTGCTTTCAGCTTCTCCA AGGCCTTGCCTTCTGCTGTCCGCCATGGGCCCCATTACCCGCCTTCTTTTGCTTATTACATCTCTGGAACGAGGGGAGATGGGAATAGGATCCTAAGGTT ATTGCTTGCAGTCTATCACCCGAGAAACAGTTATTTGTTGCATTTGAGTGCCGATGCATCCGATGAGGAGAGACTGAGACTCATTGCTGCTGTAAATGCA GTGCCTGCAGTGAGTAGTTTTGGGAATGTTGATGTTCTAGGCAAGCCCAATCGCCTTACCTATATGGGGGCTTCTCATATTGCGTCCATATTACGTGCTG CTTCGATTTTGTTGAGGTTGGATTCTGGGTGGAATTGGTTTGTCGTGTTGAGTGCTGTGGATTATCCTCTGGTGACACAGGACGTAATGCTTCTGCCTGA CGAGTTTTCATCAACGACACTTCCTGCAGATTTATCTTACGTGTTCTCTTCCGCTAGCAGGGACCTCAATTTCATTGATCACAGCAGCGACCTGGGATGG AAAGAAACTGATAGGTTCCAGCCCATTGTAGTTGATCCAGGGATTTATCTTGCAAGAAGAACACAAATCTTCTATGCCACGGAGAAGCGGAAAGCACCCG ATGCTTTCAAAATATTCACAGGCAGTTCCCCATGGGTGATCCTGAGTCGACCATTCGTCGAGTTCTGCATCCTTGGTTGGGACAGCCTTCCTCGGGTCCT ACTCATGTATTTCAACAACGTGGTTCTTTCCGAAGAGAGCTATTTCCAATCGGTGATTTGCAACGCGCCGGATTTCAAGAATACGACTGTAAATAACGAC CTCCGGTTCACAGTGTGGGACAATCCTCCAAAGATGGAGCCGCATTTCCTCAACAGTTCGGATTACGAGCTGCTTTCTCGGAGCGGTGCGGCTTTTGCTA GGCAGTTTCAGAAAGACGATCCTGTCCTTGGGATGATCGACGACAAGATACTCAAGCGTGGACGGAATCAAGTTGTTCCCGGGGGTTGGTGCACCGGAAG GCGGAGCTGGTGGTCCGATCCTTGCTCCGAGTGGGGTGATGTGAACCTTGTAAAGCCTGGACCTCAAGCAAAGAGGTTTGAAGAGACGATTTCGAACCTT CGTGACGAGTGGAGTTCGCAGATGAATCAGTGCAAAGAGAGTGCGTCGTAA
AA sequence Show only first row Show all	>Lus10012710 pacid=23148169 polypeptide=Lus10012710 locus=Lus10012710.g ID=Lus10012710.BGIv1.0 annot-version=v1.0 MGVERRWLFVLFSAASISLLFLVVYSGSAFSFSKALPSAVRHGPHYPPSFAYYISGTRGDGNRILRLLLAVYHPRNSYLLHLSADASDEERLRLIAAVNA VPAVSSFGNVDVLGKPNRLTYMGASHIASILRAASILLRLDSGWNWFVVLSAVDYPLVTQDVMLLPDEFSSTTLPADLSYVFSSASRDLNFIDHSSDLGW KETDRFQPIVVDPGIYLARRTQIFYATEKRKAPDAFKIFTGSSPWVILSRPFVEFCILGWDSLPRVLLMYFNNVVLSEESYFQSVICNAPDFKNTTVNND LRFTVWDNPPKMEPHFLNSSDYELLSRSGAAFARQFQKDDPVLGMIDDKILKRGRNQVVPGGWCTGRRSWWSDPCSEWGDVNLVKPGPQAKRFEETISNL RDEWSSQMNQCKESAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71070			Core-2/I-branching beta-1,6-N-...		Lus10012710 [exp]	0	1
AT1G72480			Lung seven transmembrane recep...		Lus10008125 [exp]	3.5	0.9248
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Lus10003374 [exp]	7.7	0.9101
AT4G34200		EDA9	embryo sac development arrest ...		Lus10019818 [exp]	9.1	0.9144
AT3G52940		ELL1, HYD2, FK	FACKEL, EXTRA-LONG-LIFESPAN 1,...		Lus10003377 [exp]	9.8	0.9124
AT5G05010			clathrin adaptor complexes med...		Lus10017131 [exp]	11.2	0.9017
AT1G48270		GCR1	G-protein-coupled receptor 1 (...		Lus10018333 [exp]	11.5	0.8624
AT3G07950			rhomboid protein-related (.1)		Lus10041408 [exp]	12.4	0.9036
AT4G29520			unknown protein		Lus10032692 [exp]	15.5	0.8496
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Lus10034800 [exp]	17.7	0.8756
AT1G72480			Lung seven transmembrane recep...		Lus10013162 [exp]	18.5	0.9009

Compare expression of checked genes

Lus10012710 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.