Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44360 145 / 6e-46 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G230100 [exp] 152 / 1e-48 AT2G44360 158 / 4e-51 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012711 pacid=23148185 polypeptide=Lus10012711 locus=Lus10012711.g ID=Lus10012711.BGIv1.0 annot-version=v1.0 ATGGCGGAAGGAGGTAATAAAGCAGATGATCAGCTCTTCCAGCTCCTCTCCGGTCTTCTTCAGCAAGTTGAAGCACTGACTAATGAGGAAGAAGTGGAAT TGAGGTCCAAGATTGAAGCTTTAGGATTAGAGGTTACGAAAGTCCCATCGAAGTCGACCAAATCCCTCGATGAGTTGGAGATAGCAGGGGAATTGGATAA GCTATCGGAGAAGTTGGCCAATGTGGATGAGATGATATCGTCAGCCATGGTTGACGATCCACAAGTGCAGTCGCTCTTGAGCGACACTGCTGATGTATGG ATGCCGGTGATCACAGCTGGCGCCGACGAGAGGAAGAACTTCACAGGAGGATCATCATCAGCATCAACTGGCAGCACTCCCAGTTCCCATCCCAATTGA
AA sequence Show only first row Show all	>Lus10012711 pacid=23148185 polypeptide=Lus10012711 locus=Lus10012711.g ID=Lus10012711.BGIv1.0 annot-version=v1.0 MAEGGNKADDQLFQLLSGLLQQVEALTNEEEVELRSKIEALGLEVTKVPSKSTKSLDELEIAGELDKLSEKLANVDEMISSAMVDDPQVQSLLSDTADVW MPVITAGADERKNFTGGSSSASTGSTPSSHPN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44360			unknown protein		Lus10012711 [exp]	0	1
AT3G03070			NADH-ubiquinone oxidoreductase...		Lus10039147 [exp]	1.0	0.8907
AT5G10780			unknown protein		Lus10040473 [exp]	5.5	0.8434
AT4G35980			unknown protein		Lus10041889 [exp]	6.0	0.8461
AT1G69980			unknown protein		Lus10010734 [exp]	8.7	0.8345
AT3G01390		AVMA10, VMA10	vacuolar membrane ATPase 10 (....		Lus10016977 [exp]	10.5	0.8049
AT1G26550			FKBP-like peptidyl-prolyl cis-...		Lus10019084 [exp]	11.0	0.8358
AT4G21105			cytochrome-c oxidases;electron...		Lus10020569 [exp]	11.5	0.7385
AT3G03100			NADH:ubiquinone oxidoreductase...		Lus10007886 [exp]	12.5	0.7611
AT1G55340			Protein of unknown function (D...		Lus10010650 [exp]	15.7	0.8305
AT1G07960		ATPDIL5-1	PDI-like 5-1 (.1.2.3)		Lus10036125 [exp]	15.7	0.8092

Compare expression of checked genes

Lus10012711 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.