Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77580 147 / 7e-38 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT3G05270 102 / 9e-23 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G21810 87 / 5e-18 Plant protein of unknown function (DUF869) (.1) AT1G19835 81 / 9e-16 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G47900 79 / 5e-15 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT4G36120 78 / 5e-15 Plant protein of unknown function (DUF869) (.1) AT2G23360 49 / 8e-06 Plant protein of unknown function (DUF869) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010888 [exp] 595 / 0 AT1G77580 233 / 2e-69 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10042719 [exp] 167 / 1e-44 AT1G77580 386 / 5e-125 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10029679 [exp] 162 / 5e-43 AT1G77580 372 / 1e-119 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10000186 [exp] 151 / 2e-39 AT1G77580 333 / 4e-106 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10018164 [exp] 150 / 1e-38 AT1G77580 395 / 6e-129 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10025674 [exp] 148 / 6e-38 AT1G77580 343 / 9e-109 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10034509 [exp] 88 / 2e-18 AT1G19835 582 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10033160 [exp] 88 / 4e-18 AT1G19835 949 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10024324 [exp] 87 / 9e-18 AT1G19835 919 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G098500 [exp] 176 / 6e-48 AT3G05270 310 / 7e-97 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G070400 [exp] 113 / 2e-26 AT3G05270 308 / 6e-96 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G178100 [exp] 110 / 2e-25 AT3G05270 356 / 1e-114 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.002G083400 [exp] 108 / 1e-24 AT3G05270 334 / 2e-105 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.002G024400 [exp] 86 / 2e-17 AT1G19835 941 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G237100 [exp] 86 / 3e-17 AT1G19835 869 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G140300 [exp] 69 / 7e-12 AT2G23360 551 / 0.0 Plant protein of unknown function (DUF869) (.1) Potri.007G046100 [exp] 63 / 3e-10 AT2G23360 549 / 3e-180 Plant protein of unknown function (DUF869) (.1) Potri.001G304200 [exp] 52 / 1e-06 AT2G23360 279 / 2e-80 Plant protein of unknown function (DUF869) (.1) Potri.009G099500 [exp] 44 / 0.0002 AT2G23360 295 / 2e-86 Plant protein of unknown function (DUF869) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05911 [flax] [poplar] FPP Filament-like plant protein, long coiled-coil
Representative CDS sequence Show only first row Show all	>Lus10012712 pacid=23148217 polypeptide=Lus10012712 locus=Lus10012712.g ID=Lus10012712.BGIv1.0 annot-version=v1.0 ATGGAGCGGCGGAGCTGGCTGTGGAGAAAGAAGTCATCATCGGCAACGTCCCCCTCTTCCGACAAGCAGATCAGTAGTATTCTCCCTCCCGATTTATCCG ACGGCGGCTCTCTCGGATCTCTCTCTGAACGATTCTCCGACGATCACCATCATCAGGCTTCGTATTCTTCAACGGCAACTCAATCGCCGTTAGAAGATCA GCACGGCGACGATGATGATCTCAACGCTCTGAAACAGAGACTCTCCGATGCGCTTCGTAACCTCAGGGCCAAGGACGATTTGGTTGCTCAGCATGCCAAA GTCGCTGAAGAGGCAGTTTCTGGCTGGGAGAAAGCAGAGAAGGAAGTGGTGGCTCTGAGGCAGCAGCTTGAGGATGTAACCAAGAAGAACGGGGAGCTCG AAGATCGAGTTGGTCACCTCGATGCAGCACTCAAAGAGTGCATGAGACAACTCCGTCTAGCCAGAGACGACCAACAACAGCTTGCTACTAAAGCTCGTGA ACTCGAGTCTTCGAATTCCGACCTTGTTTCGCAGCTTTCTCAACTCCAAGACCAGCCTCAAGCCACCAGGAGGGCCGAGACAGCTTCTACTGCATCATCA TCATCACCATCGTATGTTGATCGTGTAGAGTTTCGAGCGAAGATCGAAGGTCTTGAGAAGGAGAACTCATCCCTCAAGCAGATGCTCCTCTCTCGAGCGG AGGAGCTGGAAATCCGGATAATGGAAAGAGACCTCAGCTCGCAAGCTGCTGAAGCTGCTAGCAAACAGCACTTGGAGGCCATGAAAAAGGTTGCTAGACT CGAGGCAGAATGTCGCAAGCATCGAGGAGGAAGAATAAGCGGGTCATCGTGTTCTGGTTCACCTGCTTCTTCTGTTGGACAAAGCAGGATCATCATGTTG CCTTGTGCAGAAATCAGCCTCATGGATGATTTCCTCGAGATGGAAAGGCTCGCTGCTTCAACCGACGAATTTCCTTCAGCTGTTTCTTGTGAAACAAGCA ACAGCAGTGAAGTACTTGAGGCCAGGATTGCTGAACTAGAAGAAAAACTGGACGAAAGGCAATGTGAGGTAGGGATGTTACAAAGTCAGCTGAGGGAAAC TGATGCGGAGCTTTCGGTGCTGCAAGCCGAGTTAGCTCGTGCGAACGAATCGATCAGAGCGGGGGAAGAAGAGCTTGAGGGTGTCAAGGCGACGAAAGAA GATGCAGAGGAGACGATCAGAATGCTGCTCTCCAGAGTTGAGAAAGAGAGTGCCTCCGCAGCTGAAAATGCAAGCAAGTGTTTAGAACTGGAGAAGAGGG TTTGTGAAATGGAGCATGAATCAGAACTCCGTCGAGAAGATGAGATCAAGCGTGTCGCGAGCTTCAAGGAAGAGCTCAAGGCAAAGCAGGAGAAGGAGCT TGGAGTTGCGGCAGCGAAATTCGCAGAGTGCCAGAAAACGATCTCGAATCTGGGTCGTCAACTGAAATCTCTTGCTGCAATGGAAGACGAATTGCTAGTT TCCTAG
AA sequence Show only first row Show all	>Lus10012712 pacid=23148217 polypeptide=Lus10012712 locus=Lus10012712.g ID=Lus10012712.BGIv1.0 annot-version=v1.0 MERRSWLWRKKSSSATSPSSDKQISSILPPDLSDGGSLGSLSERFSDDHHHQASYSSTATQSPLEDQHGDDDDLNALKQRLSDALRNLRAKDDLVAQHAK VAEEAVSGWEKAEKEVVALRQQLEDVTKKNGELEDRVGHLDAALKECMRQLRLARDDQQQLATKARELESSNSDLVSQLSQLQDQPQATRRAETASTASS SSPSYVDRVEFRAKIEGLEKENSSLKQMLLSRAEELEIRIMERDLSSQAAEAASKQHLEAMKKVARLEAECRKHRGGRISGSSCSGSPASSVGQSRIIML PCAEISLMDDFLEMERLAASTDEFPSAVSCETSNSSEVLEARIAELEEKLDERQCEVGMLQSQLRETDAELSVLQAELARANESIRAGEEELEGVKATKE DAEETIRMLLSRVEKESASAAENASKCLELEKRVCEMEHESELRREDEIKRVASFKEELKAKQEKELGVAAAKFAECQKTISNLGRQLKSLAAMEDELLV S

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77580			Plant protein of unknown funct...		Lus10012712 [exp]	0	1
AT4G30210		AR2, ATR2	P450 reductase 2 (.1.2)		Lus10019996 [exp]	1.0	0.8971
AT2G36780			UDP-Glycosyltransferase superf...		Lus10007597 [exp]	2.0	0.8467
AT3G27880			Protein of unknown function (D...		Lus10014541 [exp]	2.4	0.8462
AT2G32510		MAPKKK17	mitogen-activated protein kina...		Lus10030042 [exp]	5.2	0.8177
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10023080 [exp]	8.0	0.8192
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10036376 [exp]	8.1	0.8340
AT5G35960			Protein kinase family protein ...		Lus10027964 [exp]	9.2	0.8047
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10027970 [exp]	11.5	0.8223
AT1G60710		ATB2	NAD(P)-linked oxidoreductase s...		Lus10041272 [exp]	15.3	0.8271
AT4G21540		SPHK1	sphingosine kinase 1 (.1.2.3)		Lus10011246 [exp]	16.2	0.8358

Compare expression of checked genes

Lus10012712 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.