Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33470 509 / 1e-180 HDA14, ATHDA14 histone deacetylase 14 (.1) AT3G18520 120 / 2e-29 HDA15, ATHDA15 histone deacetylase 15 (.1.2) AT1G08460 117 / 3e-29 HDA8, HDA08, ATHDA8 histone deacetylase 8 (.1) AT5G61070 114 / 2e-27 HDA18, ATHDA18 A. THALIANA HISTONE DEACETYLASE OF THE RPD3/HDA1 SUPERFAMILY 18, histone deacetylase of the RPD3/HDA1 superfamily 18 (.1) AT5G61060 114 / 2e-27 HDA5, HDA05, ATHDA5 histone deacetylase 5 (.1.2) AT4G38130 50 / 2e-06 ATHDA19, ATHD1, RPD3A, HDA19, HD1 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) AT3G44680 49 / 3e-06 HDA09, HDA9 histone deacetylase 9 (.1) AT5G63110 47 / 1e-05 RPD3B, CAT1, AXE1, ATHDA6, SIL1, RTS1, HDA6 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010889 [exp] 707 / 0 AT4G33470 610 / 0.0 histone deacetylase 14 (.1) Lus10001850 [exp] 112 / 2e-27 AT1G08460 558 / 0.0 histone deacetylase 8 (.1) Lus10013343 [exp] 110 / 1e-26 AT1G08460 559 / 0.0 histone deacetylase 8 (.1) Lus10022906 [exp] 110 / 6e-26 AT3G18520 582 / 0.0 histone deacetylase 15 (.1.2) Lus10034689 [exp] 110 / 6e-26 AT5G61060 876 / 0.0 histone deacetylase 5 (.1.2) Lus10024919 [exp] 108 / 2e-25 AT3G18520 622 / 0.0 histone deacetylase 15 (.1.2) Lus10017845 [exp] 96 / 4e-21 AT5G61060 868 / 0.0 histone deacetylase 5 (.1.2) Lus10019486 [exp] 53 / 3e-07 AT5G63110 727 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Lus10043337 [exp] 52 / 4e-07 AT5G63110 629 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G064200 [exp] 560 / 0 AT4G33470 622 / 0.0 histone deacetylase 14 (.1) Potri.012G060400 [exp] 115 / 8e-28 AT3G18520 637 / 0.0 histone deacetylase 15 (.1.2) Potri.004G092900 [exp] 103 / 1e-23 AT5G61060 915 / 0.0 histone deacetylase 5 (.1.2) Potri.009G020500 [exp] 96 / 7e-22 AT1G08460 552 / 0.0 histone deacetylase 8 (.1) Potri.012G083800 [exp] 56 / 3e-08 AT5G63110 716 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.015G082500 [exp] 50 / 1e-06 AT5G63110 728 / 0.0 RNA-MEDIATED TRANSCRIPTIONAL SILENCING 1, histone deacetylase 6 (.1) Potri.001G460000 [exp] 50 / 2e-06 AT3G44680 739 / 0.0 histone deacetylase 9 (.1) Potri.009G170700 [exp] 48 / 7e-06 AT4G38130 811 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2) Potri.004G209800 [exp] 47 / 1e-05 AT4G38130 815 / 0.0 ARABIDOPSIS HISTONE DEACETYLASE 19, ARABIDOPSIS HISTONE DEACETYLASE 1, histone deacetylase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0302 [flax] [poplar] Arginase PF00850 [flax] [poplar] Hist_deacetyl Histone deacetylase domain
Representative CDS sequence Show only first row Show all	>Lus10012713 pacid=23148225 polypeptide=Lus10012713 locus=Lus10012713.g ID=Lus10012713.BGIv1.0 annot-version=v1.0 ATGGGAGCGACGGCTGCTGTTGGGGGCGACGATGGTGTACAAGGTTGTTATTTATATGTGTTCGAATCCGCTGGAAACCCTAGATATATTTTGATTGGAC GTATTTGTCCTTGGTGGGTTTTGGAAAGTTCCGGTCTCAAACGCTTGCGCATTTACTCGAGACGGCACTGCAGGCCAGCTACTCGAACTTATGTTTCGTG TTCGAATCATTTGGAGAAGCAATCGGAACCGCTTCCAATTCTGAATTTAACTGATGCGCGAGTCATCTACAGCGTGGCCCCTGCCATGGGTCATAACCAG GAGGCACATCCAGAATCCCATTTCAGGGTTCCTGCAATTGTGAGTGCTCTTGAGGAGATGGAACTCACTCCAAAGTTTCGTGGTTCAGAGATCATTGAGC TCACAAGTTTCAAACCTGCTTCAGTGGATGAGATTGCCAATGTTCATAGTAAAGGATATGTCACAGGCCTTGAAAAGGCCATGGATAAAGCTTCTCATCA AGGCATTATATTAATCGAGAGAACTGGGCCAACCTACGCCACTTCGACAACACTCCAGGAGTCGCTTGTAGCAGCTGGAGCTGGAATTTCGTTGGTTGAT TCAGTGGTTGCAGCATCAAAGAACTGTCAGAATCCTCCCACAGGGTTTGCTCTGATAAGACCACCGGGGCACCACGCAGTTCCTAAGGGCCCAATGGGCT TTTGTGTATTCGATGTGTTCTTCTTATCTACACACCAGAACGGAAGCTACCCCGGTACGGGTAAGATAGATGAGGTTGGTGTTGGTGCCGGCGAAGGAAC AACACTGAATCTGCCTCTACCTGGAGGATCAGGTGACACAGCAATGAGAACTGTTTTTGATGAAGTCATTGCACCATGTGCTCAAAGGTTCAAGCCAGAC ATTATCCTCGTCTCTGCAGGTTATGATGGGCATGTACTAGATCCACTTGCCAGTCTGCAGTACACAACATCAACCTACTACTCTCTTGCATCCAACATCA AGCAGCTGGCCAAGGACTTGTGCGGGGGACGGTGCGTATTCTTCTTGGAAGGAGGTTATAACCTAGAATCTCTGTCGTATTCGGTGGCCGACACATTCAG AGCCCTGCTGGGGGACAAGAGCATGGCTTCAGAGTTCGATAACCCCGCTATCCTGTACGAGGAACCATCGTCCAGGGTTAAGCAGGCGATCGATAGAGTG AAACATCTTCATTCCTTCTAA
AA sequence Show only first row Show all	>Lus10012713 pacid=23148225 polypeptide=Lus10012713 locus=Lus10012713.g ID=Lus10012713.BGIv1.0 annot-version=v1.0 MGATAAVGGDDGVQGCYLYVFESAGNPRYILIGRICPWWVLESSGLKRLRIYSRRHCRPATRTYVSCSNHLEKQSEPLPILNLTDARVIYSVAPAMGHNQ EAHPESHFRVPAIVSALEEMELTPKFRGSEIIELTSFKPASVDEIANVHSKGYVTGLEKAMDKASHQGIILIERTGPTYATSTTLQESLVAAGAGISLVD SVVAASKNCQNPPTGFALIRPPGHHAVPKGPMGFCVFDVFFLSTHQNGSYPGTGKIDEVGVGAGEGTTLNLPLPGGSGDTAMRTVFDEVIAPCAQRFKPD IILVSAGYDGHVLDPLASLQYTTSTYYSLASNIKQLAKDLCGGRCVFFLEGGYNLESLSYSVADTFRALLGDKSMASEFDNPAILYEEPSSRVKQAIDRV KHLHSF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33470		HDA14, ATHDA14	histone deacetylase 14 (.1)		Lus10012713 [exp]	0	1
AT4G33470		HDA14, ATHDA14	histone deacetylase 14 (.1)		Lus10010889 [exp]	1.0	0.8930
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Lus10023930 [exp]	2.8	0.8743
AT2G04842		EMB2761	EMBRYO DEFECTIVE 2761, threony...		Lus10012360 [exp]	7.1	0.8405
AT5G40270			HD domain-containing metal-dep...		Lus10029160 [exp]	7.7	0.8310
AT3G17670			tetratricopeptide repeat (TPR)...		Lus10007446 [exp]	11.2	0.8162
AT3G13040	GARP		myb-like HTH transcriptional r...		Lus10035705 [exp]	13.1	0.7750
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Lus10039671 [exp]	16.1	0.8225
AT4G24810			Protein kinase superfamily pro...		Lus10032628 [exp]	18.4	0.7717
AT5G04440			Protein of unknown function (D...		Lus10037929 [exp]	20.1	0.8188
AT1G06130		GLX2-4	glyoxalase 2-4 (.1.2)		Lus10039860 [exp]	20.5	0.8174

Compare expression of checked genes

Lus10012713 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.