Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19680 410 / 2e-144 Leucine-rich repeat (LRR) family protein (.1) AT5G22320 61 / 5e-10 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) AT1G78230 56 / 2e-08 Outer arm dynein light chain 1 protein (.1) AT4G03260 49 / 2e-06 Outer arm dynein light chain 1 protein (.1.2) AT2G30105 46 / 2e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010891 [exp] 444 / 7e-159 AT5G19680 384 / 3e-135 Leucine-rich repeat (LRR) family protein (.1) Lus10010892 [exp] 129 / 2e-37 AT5G19680 104 / 2e-28 Leucine-rich repeat (LRR) family protein (.1) Lus10013308 [exp] 62 / 2e-10 AT5G22320 362 / 9e-122 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10005198 [exp] 59 / 3e-09 AT5G22320 318 / 9e-105 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10020932 [exp] 52 / 2e-07 AT1G78230 448 / 1e-149 Outer arm dynein light chain 1 protein (.1) Lus10033444 [exp] 52 / 3e-07 AT1G78230 450 / 8e-151 Outer arm dynein light chain 1 protein (.1) Lus10018514 [exp] 52 / 4e-07 AT4G03260 509 / 1e-172 Outer arm dynein light chain 1 protein (.1.2) Lus10035976 [exp] 45 / 6e-05 AT4G35470 652 / 0.0 plant intracellular ras group-related LRR 4 (.1) Lus10009429 [exp] 44 / 0.0002 AT1G34420 809 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G086200 [exp] 429 / 8e-152 AT5G19680 486 / 5e-174 Leucine-rich repeat (LRR) family protein (.1) Potri.006G163900 [exp] 429 / 8e-152 AT5G19680 513 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.004G199200 [exp] 66 / 1e-11 AT5G22320 354 / 2e-118 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.005G164000 [exp] 54 / 1e-07 AT1G78230 464 / 2e-155 Outer arm dynein light chain 1 protein (.1) Potri.002G097800 [exp] 53 / 1e-07 AT1G78230 523 / 3e-178 Outer arm dynein light chain 1 protein (.1) Potri.019G119300 [exp] 53 / 2e-07 AT4G03260 549 / 0.0 Outer arm dynein light chain 1 protein (.1.2) Potri.019G119500 [exp] 52 / 3e-07 AT4G03260 521 / 3e-177 Outer arm dynein light chain 1 protein (.1.2) Potri.011G090200 [exp] 49 / 3e-06 AT2G34680 1307 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 9, Outer arm dynein light chain 1 protein (.1) Potri.015G024500 [exp] 45 / 6e-05 AT2G34930 315 / 7e-92 disease resistance family protein / LRR family protein (.1) Potri.012G130400 [exp] 44 / 0.0001 AT5G62230 1412 / 0.0 ERECTA-like 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10012715 pacid=23148162 polypeptide=Lus10012715 locus=Lus10012715.g ID=Lus10012715.BGIv1.0 annot-version=v1.0 ATGGACGGGCAACCGCCGGAGAATCCTCCGTCACTGGATGGAGCTCTCGAGGAGATGAATGACACCATGCTCGACCTCACCAGCTGCCAACTCCACGATC TCAGCTCCGTCGAGCTACCGCCGACGCTCACCGAGCTAGACCTCACTGCCAATCGCCTGTCCACCTTGGACCCTAGGATTTCTAATCTCTCGAATCTCGC CAAGCTCTCTCTCCGCCAGAACCTGATCGAAGATGCCGCGGAACTGGTCCTTCGAGATAATAAGCTCGCTAAAATCCCTGACGCCACCTTGTTCAAGAAA CTGTTGGTTTTTGACGTCTCTTTCAATGAGATCGTTTCGTTGATAGGACTGGCCAATGTTTCTCCTACGCTCAGGGAGTTGTATGTCTCCAAGAACGAAG TTCCTAAGATTGAGGAGATTGATCACCTCTTTCAGCTGCGGATTCTTGAACTTGGTTCCAATAGACTCAGGGTAATGGAGAACCTGGAAAATCTGACGAA CTTGGAGGAGTTGTGGCTTGGACGGAATCGCATCAAATTGGTTAACCTCTGTGGATTGAAATGCATAAAAAAGATTAGCTTACAGAGCAATCGACTGACT TCGATGCAGGGTTTTGAGGGCTGTGTTTCCATAGAGGAGCTATACTTGAGCCATAATGGTATTGAGAAAATGGAAGGGCTATCGACCTTGGTTAACCTCC GGGTGCTTGATGTATCGTCTAACAAGCTGACTTCAGTTGATGACATTCAGAATCTCACGAAGTTGGAAGATCTGTGGCTTAATGATAACAGGATAGAATC ACTTGGAAGCATTAATGATGCTGTTGCTGGCTCAAGAGAGAAACTGACCACAATCTACCTGGAAAACAATCCATGTGCAAAAGCTCCAGGCTACTGCTCC ACTTTGAAGGAGATATTTCCAAACATTCTACAGATCGACTCCAACGTGTATGGTTAG
AA sequence Show only first row Show all	>Lus10012715 pacid=23148162 polypeptide=Lus10012715 locus=Lus10012715.g ID=Lus10012715.BGIv1.0 annot-version=v1.0 MDGQPPENPPSLDGALEEMNDTMLDLTSCQLHDLSSVELPPTLTELDLTANRLSTLDPRISNLSNLAKLSLRQNLIEDAAELVLRDNKLAKIPDATLFKK LLVFDVSFNEIVSLIGLANVSPTLRELYVSKNEVPKIEEIDHLFQLRILELGSNRLRVMENLENLTNLEELWLGRNRIKLVNLCGLKCIKKISLQSNRLT SMQGFEGCVSIEELYLSHNGIEKMEGLSTLVNLRVLDVSSNKLTSVDDIQNLTKLEDLWLNDNRIESLGSINDAVAGSREKLTTIYLENNPCAKAPGYCS TLKEIFPNILQIDSNVYG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19680			Leucine-rich repeat (LRR) fami...		Lus10012715 [exp]	0	1
AT5G19680			Leucine-rich repeat (LRR) fami...		Lus10010891 [exp]	1.0	0.8846
AT5G63870		PP7, ATPP7	serine/threonine phosphatase 7...		Lus10020898 [exp]	2.0	0.8289
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10041288 [exp]	3.5	0.8478
AT3G13980			unknown protein		Lus10025011 [exp]	5.7	0.8106
AT5G42790		ARS5, ATPSM30, ...	ARSENIC TOLERANCE 5, proteasom...		Lus10024269 [exp]	6.9	0.8219
AT3G09070			Protein of unknown function (D...		Lus10035513 [exp]	9.0	0.8402
AT2G01630			O-Glycosyl hydrolases family 1...		Lus10034607 [exp]	9.9	0.8194
AT3G26400		EIF4B1	eukaryotic translation initiat...		Lus10036874 [exp]	13.4	0.8139
AT3G19540			Protein of unknown function (D...		Lus10024790 [exp]	14.4	0.8190
AT1G74690		IQD31	IQ-domain 31 (.1)		Lus10004263 [exp]	15.0	0.8247

Compare expression of checked genes

Lus10012715 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.