Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21120 414 / 9e-146 Protein of unknown function (DUF803) (.1) AT4G38730 406 / 1e-142 Protein of unknown function (DUF803) (.1) AT1G71900 386 / 3e-134 Protein of unknown function (DUF803) (.1) AT1G34470 379 / 2e-131 Protein of unknown function (DUF803) (.1) AT4G13800 377 / 6e-131 Protein of unknown function (DUF803) (.1) AT3G23870 367 / 4e-127 Protein of unknown function (DUF803) (.1) AT4G09640 363 / 1e-124 Protein of unknown function (DUF803) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010893 [exp] 617 / 0 AT2G21120 416 / 8e-147 Protein of unknown function (DUF803) (.1) Lus10026280 [exp] 400 / 2e-139 AT2G21120 498 / 2e-178 Protein of unknown function (DUF803) (.1) Lus10006072 [exp] 370 / 1e-128 AT1G71900 503 / 0.0 Protein of unknown function (DUF803) (.1) Lus10015480 [exp] 356 / 2e-122 AT1G71900 548 / 0.0 Protein of unknown function (DUF803) (.1) Lus10042393 [exp] 328 / 4e-112 AT4G38730 424 / 2e-150 Protein of unknown function (DUF803) (.1) Lus10019952 [exp] 330 / 5e-112 AT1G71900 454 / 4e-161 Protein of unknown function (DUF803) (.1) Lus10022549 [exp] 325 / 2e-110 AT4G13800 408 / 2e-143 Protein of unknown function (DUF803) (.1) Lus10016636 [exp] 261 / 4e-86 AT3G23870 312 / 2e-106 Protein of unknown function (DUF803) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G305700 [exp] 570 / 0 AT2G21120 442 / 9e-157 Protein of unknown function (DUF803) (.1) Potri.019G001100 [exp] 551 / 0 AT2G21120 433 / 5e-153 Protein of unknown function (DUF803) (.1) Potri.001G253100 [exp] 400 / 6e-140 AT1G34470 379 / 6e-131 Protein of unknown function (DUF803) (.1) Potri.009G047400 [exp] 391 / 3e-136 AT1G34470 414 / 5e-145 Protein of unknown function (DUF803) (.1) Potri.004G168900 [exp] 388 / 2e-135 AT2G21120 488 / 6e-175 Protein of unknown function (DUF803) (.1) Potri.003G009700 [exp] 388 / 4e-135 AT1G71900 463 / 9e-165 Protein of unknown function (DUF803) (.1) Potri.019G084600 [exp] 376 / 2e-130 AT1G71900 423 / 5e-149 Protein of unknown function (DUF803) (.1) Potri.013G114100 [exp] 375 / 6e-130 AT1G71900 439 / 4e-155 Protein of unknown function (DUF803) (.1) Potri.001G318700 [exp] 370 / 2e-128 AT4G13800 379 / 8e-132 Protein of unknown function (DUF803) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF05653 [flax] [poplar] Mg_trans_NIPA Magnesium transporter NIPA
Representative CDS sequence Show only first row Show all	>Lus10012716 pacid=23148194 polypeptide=Lus10012716 locus=Lus10012716.g ID=Lus10012716.BGIv1.0 annot-version=v1.0 ATGTACTCGAGCAATTTGAAAGGTTTCGTACTGGCTGTTGTGTCCAGTGGCTTCATCGGCTCCAGCTTCATCTTCAAGAAGAAAGGTCTCCTTAGGGCTG GGGTCAACGGCCCTCGCGCAGGCGTTGGGGGGTATGGTTATTTGCGGGAGCCTTTGTGGTGGATCGGAATGATTACTATGATTGTTGGAGAGATTGCTAA CTTCATAGCCTACATTTATGCTCCTGCTGTTCTTGTCACACCACTAGGAGCTTTGAGCATCATTGTAAGTGCTGTATTGGCACATTTCTTACTAAGGGAG AAACTCCAAAAGATGGGTGTATTGGGTTGCCTTCTCTGCATAGTAGGTTCCACAGTAATTGTGCTGCATGCTCCTCAAGAACGATCTATCAACTCCGTTG AAGAAATATGGGGACTAGCTACCCAACCAGCATTTCTTATCTATACGGGTTCTGCTATTGCTGTGGCGTTGGTCTTGATTTTCTTCTGTGCTCCACGTTA TGGCCAAACCAACATCATGATCTATTTAGGAATATGCTCCATTGTGGGTTCATTGACGGTTATGAGTGTAAAGGCCATAGGCATTGCAATAAAGCTAACA TTCGATGGTGTAAACCAAGCCACATACTTTCAGACGTGGGTTTTCACAATGGTCACAATTACATGTATCATCATTCAATTAATATATTTGAACATGGCAT TAGACACCTTCAACACAGCTGTTGTCTCTCCCATCTATTACGCCATGTTCACATCTTTCACAATTTTAGCCAGTGCAATAATGTTCAAGGATTACTCCGG CCAAAGTGCAAGCAGTATTGCATCAGAGCTTTGCGGGTTCATAACCGTGTTGTCCGGGACCTCAGTGCTGCACAGTACAAGAGAACCGGATCCACCTTCG ACGGCAGATCATTACACGCCGTTATCCCCAAGAGTGTCGTGGTACATCCAAGGTAACGGAGAGGTACGGAAGCAGAAGGATGACGATGGCACAGCTGCGA ATTTCATCACGATTTTGAAGCAGGATCACTTCAGATGA
AA sequence Show only first row Show all	>Lus10012716 pacid=23148194 polypeptide=Lus10012716 locus=Lus10012716.g ID=Lus10012716.BGIv1.0 annot-version=v1.0 MYSSNLKGFVLAVVSSGFIGSSFIFKKKGLLRAGVNGPRAGVGGYGYLREPLWWIGMITMIVGEIANFIAYIYAPAVLVTPLGALSIIVSAVLAHFLLRE KLQKMGVLGCLLCIVGSTVIVLHAPQERSINSVEEIWGLATQPAFLIYTGSAIAVALVLIFFCAPRYGQTNIMIYLGICSIVGSLTVMSVKAIGIAIKLT FDGVNQATYFQTWVFTMVTITCIIIQLIYLNMALDTFNTAVVSPIYYAMFTSFTILASAIMFKDYSGQSASSIASELCGFITVLSGTSVLHSTREPDPPS TADHYTPLSPRVSWYIQGNGEVRKQKDDDGTAANFITILKQDHFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21120			Protein of unknown function (D...		Lus10012716 [exp]	0	1
AT2G21120			Protein of unknown function (D...		Lus10010893 [exp]	1.0	0.9363
AT4G37030			unknown protein		Lus10011021 [exp]	2.8	0.9301
AT4G30360		ATCNGC17	cyclic nucleotide-gated channe...		Lus10019983 [exp]	3.2	0.9311
AT2G33740		CUTA	Nitrogen regulatory PII-like, ...		Lus10014898 [exp]	4.9	0.9302
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10040468 [exp]	6.9	0.9153
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Lus10005298 [exp]	7.1	0.9292
AT1G63855			Putative methyltransferase fam...		Lus10041869 [exp]	9.0	0.9002
AT2G32080		PUR ALPHA-1, PU...	purin-rich alpha 1 (.1.2)		Lus10009182 [exp]	9.5	0.9052
AT5G17290		ATG5, APG5, ATA...	AUTOPHAGY 5, autophagy protein...		Lus10020737 [exp]	11.2	0.8853
AT4G02860			Phenazine biosynthesis PhzC/Ph...		Lus10003725 [exp]	11.5	0.9028

Compare expression of checked genes

Lus10012716 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.