Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24290 734 / 0 MAC/Perforin domain-containing protein (.1.2) AT1G28380 536 / 0 NSL1 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) AT1G14780 428 / 4e-143 MAC/Perforin domain-containing protein (.1) AT1G29690 409 / 3e-136 CAD1 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010894 [exp] 1144 / 0 AT4G24290 761 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10035789 [exp] 739 / 0 AT4G24290 911 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10037363 [exp] 678 / 0 AT4G24290 837 / 0.0 MAC/Perforin domain-containing protein (.1.2) Lus10025453 [exp] 566 / 0 AT1G28380 745 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Lus10037426 [exp] 459 / 4e-155 AT1G14780 514 / 2e-176 MAC/Perforin domain-containing protein (.1) Lus10041285 [exp] 458 / 1e-154 AT1G14780 507 / 2e-173 MAC/Perforin domain-containing protein (.1) Lus10029279 [exp] 431 / 8e-145 AT1G29690 868 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10002768 [exp] 417 / 1e-139 AT1G29690 863 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Lus10025153 [exp] 355 / 2e-114 AT1G29690 595 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G305600 [exp] 855 / 0 AT4G24290 783 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.019G001000 [exp] 848 / 0 AT4G24290 780 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.003G006500 [exp] 771 / 0 AT4G24290 922 / 0.0 MAC/Perforin domain-containing protein (.1.2) Potri.011G057100 [exp] 612 / 0 AT1G28380 790 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Potri.004G047700 [exp] 588 / 0 AT1G28380 809 / 0.0 necrotic spotted lesions 1, MAC/Perforin domain-containing protein (.1) Potri.008G136401 [exp] 476 / 6e-162 AT1G14780 691 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.010G104600 [exp] 473 / 4e-161 AT1G14780 697 / 0.0 MAC/Perforin domain-containing protein (.1) Potri.002G234700 [exp] 451 / 3e-152 AT1G14780 520 / 8e-179 MAC/Perforin domain-containing protein (.1) Potri.004G064000 [exp] 425 / 1e-142 AT1G29690 901 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1) Potri.011G075500 [exp] 419 / 7e-140 AT1G29690 890 / 0.0 constitutively activated cell death 1, MAC/Perforin domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [flax] [poplar] CDC PF01823 [flax] [poplar] MACPF MAC/Perforin domain
Representative CDS sequence Show only first row Show all	>Lus10012717 pacid=23148198 polypeptide=Lus10012717 locus=Lus10012717.g ID=Lus10012717.BGIv1.0 annot-version=v1.0 ATGGCGGCAGCTACTACTACTGCTTCGGCAAAGAGAGCTGCCGAGGCGGCCGTGCAGGCCATCGGCCAAGGGTTTGACCTCACCGTCGACTTACGTCTCA AGTACTGCAAGCCTCATTCACTCATCATGGACGACGATCGTAACTCCTTACACCGTCTCTCAATCCCTGTTCCTCCTGGCTTCTCGATTCCCTCCGTCTC TAAATCGATCAAGTGTGATAAGGGCGAGCGCACCAGGTTCAGCTCCGATCTCCTCTCTTTTCAACAGATGTCTGAGCAGTTTAATCAGGATTTATCGCTA TCTGGCAAAATTCCTTCTGGAGCTTTTAATACTGCGTTTGAATTCACTGGTGTCTGGCAAAAGGACGCTGCCTCTACGAAATCCTTAGCGTTCGATGGGG TATTTATCACGCTTTACAGCATTGCTCTTCAGAAATCGCAGGTTCTGCTTTCTGATCATATCAAGCAAGCTGTTCCTTCATCTTGGGACCCCGCTGCATT AGCTAGATTTATTGAGAAATACGGTACTCACCTTATAGTCGGTGTCAAAATGGGAGGGAAGGATGTTGTCTACGTGAAGCAGCAGCATGGATCGCCTCTC CAACCTGTTGATGTCCAGAAGAATTTGAAAGGCCTGGCAGATAAAATATTGACAGATGGAACTGGCCAGACTGGTTTGAAGCGAGACAGAAAGTTTGTGA AGGAGAACGGTCTGGCGTATATGAACCACTTTGCTGCCAACTCTTATTCCACTGATGAGGATTCAAAGTTCATTCATAAGAGAATAGGTGGCTTGGATAA AACCCTGCCCCACAGTGATTGGGCTCACACGGTTCAGTTTGAGCCTGAAGTTATATCAATGTCATTTGTCCCCATTACATCCCTACTGAGTGGAATTGAT GGTAGCGGGTTCTTGACACATGCCATTAATCTCTATATCCGTTATAAGCCACCAATAGAAGAGCTACATCAATTCCTGGAGTTCCAGCTTCCCAAGCATT GGGCACCCGTATTCGGTGAGCTCGCCCTCGGTCCTGATAAAAAGCACCAAGGCAATGCATCACTGCAGTTCAGCTTCATGGGTCCTAGACTTTATGTTAA CACAATGCCGGTATACGTGGACAACAAGCCAGTTACAGGTCTCCGACTATACTTGGAAGGAAAACGAAGCAACTGCTTAGCAATCCACTTACAACACCTT TCCTCATCACCCAAGACATTCCAACTCGAAAACAAATCGAATGGCAACCTCACCTCCGCATCATCAGCCTCAGACCGCAGGTACTACGAAAAAGTCCAGT GGAAGAGTTTCTCCCACGTCTGCACAGCCCCCGTAGAGAGTGAAGACGAACTCTCAATCGTGACCGGAGCCCACTTCGAAGTCGGCGAGTCGGGCCTAAA GAACGTCCTCTTTCTTAGGCTCCATTTCTCCAAAGTCATCGGAGCCAGCGCCACGAGGAAAGTCGAGTGGGACGGCTCCCCCGCCAGTAACCAGAAGTCG GGGATCATATCGGCATTGATCAGCACTCGATTCTCGAGCGCTCAGAAGGCCCCTGCTGCTCCGAGCCCGAGTGAAGTCCAGCTGAACTCGGCTGTGTATC CCGGTGGCCCTCCGGTTTCGACTCAGGCTCCGAAGCTGCTCAAGTACGTGGACACGACAGAGATGACGAGGGGCCCACAGGACACGCCGGGTTACTGGGT TGTTTCGGGTGCGAAGCTGAATGTGGAGAAAGGGAAGATATCTGTGAGAGTGAAGTATTCTCTGCTGACTTTGGTTTTTCCTGATGATGAAGAAGAGGAG ATGAGTTAA
AA sequence Show only first row Show all	>Lus10012717 pacid=23148198 polypeptide=Lus10012717 locus=Lus10012717.g ID=Lus10012717.BGIv1.0 annot-version=v1.0 MAAATTTASAKRAAEAAVQAIGQGFDLTVDLRLKYCKPHSLIMDDDRNSLHRLSIPVPPGFSIPSVSKSIKCDKGERTRFSSDLLSFQQMSEQFNQDLSL SGKIPSGAFNTAFEFTGVWQKDAASTKSLAFDGVFITLYSIALQKSQVLLSDHIKQAVPSSWDPAALARFIEKYGTHLIVGVKMGGKDVVYVKQQHGSPL QPVDVQKNLKGLADKILTDGTGQTGLKRDRKFVKENGLAYMNHFAANSYSTDEDSKFIHKRIGGLDKTLPHSDWAHTVQFEPEVISMSFVPITSLLSGID GSGFLTHAINLYIRYKPPIEELHQFLEFQLPKHWAPVFGELALGPDKKHQGNASLQFSFMGPRLYVNTMPVYVDNKPVTGLRLYLEGKRSNCLAIHLQHL SSSPKTFQLENKSNGNLTSASSASDRRYYEKVQWKSFSHVCTAPVESEDELSIVTGAHFEVGESGLKNVLFLRLHFSKVIGASATRKVEWDGSPASNQKS GIISALISTRFSSAQKAPAAPSPSEVQLNSAVYPGGPPVSTQAPKLLKYVDTTEMTRGPQDTPGYWVVSGAKLNVEKGKISVRVKYSLLTLVFPDDEEEE MS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24290			MAC/Perforin domain-containing...		Lus10012717 [exp]	0	1
AT4G24290			MAC/Perforin domain-containing...		Lus10010894 [exp]	1.0	0.9620
AT1G54320			LEM3 (ligand-effect modulator ...		Lus10001762 [exp]	2.6	0.9454
AT1G63830			PLAC8 family protein (.1.2.3)		Lus10017509 [exp]	4.2	0.9495
AT1G11050			Protein kinase superfamily pro...		Lus10018855 [exp]	5.7	0.9566
AT1G11050			Protein kinase superfamily pro...		Lus10028549 [exp]	7.1	0.9360
AT4G30600			signal recognition particle re...		Lus10017891 [exp]	8.1	0.9531
AT1G15530			Concanavalin A-like lectin pro...		Lus10019879 [exp]	9.4	0.9508
AT3G51660			Tautomerase/MIF superfamily pr...		Lus10012222 [exp]	9.7	0.9105
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10008838 [exp]	12.0	0.9414
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10030022 [exp]	14.7	0.9497

Compare expression of checked genes

Lus10012717 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.