Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73300 384 / 1e-131 SCPL2 serine carboxypeptidase-like 2 (.1) AT1G73280 380 / 5e-130 SCPL3 serine carboxypeptidase-like 3 (.1) AT5G36180 375 / 5e-128 SCPL1 serine carboxypeptidase-like 1 (.1) AT1G73290 371 / 1e-126 SCPL5 serine carboxypeptidase-like 5 (.1) AT3G12203 366 / 2e-124 SCPL17 serine carboxypeptidase-like 17 (.1) AT1G73270 362 / 1e-122 SCPL6 serine carboxypeptidase-like 6 (.1) AT5G09640 360 / 8e-122 SNG2, SCPL19 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) AT3G10450 357 / 3e-121 SCPL7 serine carboxypeptidase-like 7 (.1.2) AT2G22980 355 / 3e-120 SCPL13 serine carboxypeptidase-like 13 (.1.2.3.4) AT1G33540 354 / 9e-120 SCPL18 serine carboxypeptidase-like 18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010895 [exp] 504 / 1e-178 AT1G73280 444 / 6e-154 serine carboxypeptidase-like 3 (.1) Lus10007732 [exp] 414 / 2e-143 AT3G12203 423 / 7e-146 serine carboxypeptidase-like 17 (.1) Lus10018667 [exp] 445 / 6e-143 AT1G73280 478 / 2e-153 serine carboxypeptidase-like 3 (.1) Lus10007731 [exp] 396 / 5e-136 AT5G09640 504 / 4e-177 SINAPOYLGLUCOSE ACCUMULATOR 2, serine carboxypeptidase-like 19 (.1) Lus10025859 [exp] 250 / 1e-78 AT4G12910 694 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10038240 [exp] 246 / 8e-77 AT4G12910 689 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020206 [exp] 236 / 3e-73 AT4G12910 603 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10020387 [exp] 244 / 7e-73 AT4G12910 627 / 0.0 serine carboxypeptidase-like 20 (.1) Lus10009562 [exp] 237 / 1e-70 AT4G12910 617 / 0.0 serine carboxypeptidase-like 20 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G124900 [exp] 404 / 2e-139 AT1G73280 513 / 0.0 serine carboxypeptidase-like 3 (.1) Potri.001G291300 [exp] 351 / 3e-118 AT1G33540 434 / 9e-150 serine carboxypeptidase-like 18 (.1) Potri.001G291700 [exp] 346 / 3e-116 AT1G33540 414 / 8e-142 serine carboxypeptidase-like 18 (.1) Potri.001G290900 [exp] 345 / 1e-115 AT1G33540 430 / 8e-148 serine carboxypeptidase-like 18 (.1) Potri.001G290800 [exp] 342 / 1e-115 AT1G33540 404 / 6e-139 serine carboxypeptidase-like 18 (.1) Potri.001G291800 [exp] 342 / 1e-114 AT1G73300 432 / 1e-148 serine carboxypeptidase-like 2 (.1) Potri.001G312800 [exp] 270 / 2e-86 AT1G33540 402 / 3e-137 serine carboxypeptidase-like 18 (.1) Potri.014G177500 [exp] 243 / 6e-76 AT4G12910 743 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.019G054300 [exp] 224 / 1e-68 AT4G12910 636 / 0.0 serine carboxypeptidase-like 20 (.1) Potri.006G036400 [exp] 139 / 7e-37 AT2G33530 547 / 0.0 serine carboxypeptidase-like 46 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10012718 pacid=23148192 polypeptide=Lus10012718 locus=Lus10012718.g ID=Lus10012718.BGIv1.0 annot-version=v1.0 ATGGGAAAACAGAGCATCACCCTCTGGTTTCAGCTAGTTCTGTTGCTTCTTATTTGTGTTGAATCAAACAGTACTACTGCCGCCATTATAAAGCATCTTC CTGGGTTTCGAGGGCCGCTTCCGTTCTATTTGGAAACTGGGTATGTTGGGGTCGGAGAGGCAGAGGAACTGCAGCTGTTTTACTACTTTGTTAAGTCGGA GAAGAGCCCTCGGGATGATCCTCTTCTCCTCTGGCTCACCGGCGGCCCCGCATGCTCTTCCATTTCCGGCCTCGTCTTAGAAAATGGGTTCTCTTATGCA ACGAATCATTCTGCTCTACGATCATCGGACCAAATCCAAGTTTCCCAAGCTGAAGAATTCATCAGAAAGTGGCTAAGGAAACACAAGGAGTTCCTGAAGA GCCCACTTTACATTGCTGGAGATTCCTACTCAGGCATCACAGTTCCACCCATAGTCCAACGGCTTTCTATTGGAAACGAGAAGGGCATTCGGCCGATGTT GAACCTCAAGGGATACATACTCGGAAACCCTATAACGGATTACGGGTTTATGGAAAATAGCCAAATCCCGTTTGCACACGGGATGGCGCTCATTTCAGAT GAACTCTACCAGGCATTGGAGAGAAGCTGCAAGGGGGAGTACCATAGAGTGGATTCCGCCAACTTGGAATGTAACAATAACTTGATGGCTTTCGAGGAGT GTCTATCAGGGATTGACCAAGGGTGGATACTTGGCCCTACTTGTTTTACTTATAATGACGGTTTTGCCCACAGAAGGAGAATCCTCTTTGATCTACCTGT GGATGTCTGCGAAACTTATACCTATGGTCAACTGCTTTGCGAGTACTGGGGCAAGGATGTTGAAGTCGGCAAAGCCCTTCACATAAGAGAGGGGACGATC GGGGAGTGGGCGAGATGCACTCATGGGTTGGATTATGAGCAAGATATCGACAGCAGTTTTGAGTATCACGTCAACCTTTCAACCAAGGGTTATCGTTCAT TAATCTACAACGGAGACCATGATCTTATCGTTACATTCCTCGGAACGCAAGCTTGGATTCGAGCTCTTAACTACTCCATTGTCGATGATTGGCGTTCTTG GCATGTTGAAGGTCAAGTTGCAGGGTAA
AA sequence Show only first row Show all	>Lus10012718 pacid=23148192 polypeptide=Lus10012718 locus=Lus10012718.g ID=Lus10012718.BGIv1.0 annot-version=v1.0 MGKQSITLWFQLVLLLLICVESNSTTAAIIKHLPGFRGPLPFYLETGYVGVGEAEELQLFYYFVKSEKSPRDDPLLLWLTGGPACSSISGLVLENGFSYA TNHSALRSSDQIQVSQAEEFIRKWLRKHKEFLKSPLYIAGDSYSGITVPPIVQRLSIGNEKGIRPMLNLKGYILGNPITDYGFMENSQIPFAHGMALISD ELYQALERSCKGEYHRVDSANLECNNNLMAFEECLSGIDQGWILGPTCFTYNDGFAHRRRILFDLPVDVCETYTYGQLLCEYWGKDVEVGKALHIREGTI GEWARCTHGLDYEQDIDSSFEYHVNLSTKGYRSLIYNGDHDLIVTFLGTQAWIRALNYSIVDDWRSWHVEGQVAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73300		SCPL2	serine carboxypeptidase-like 2...		Lus10012718 [exp]	0	1
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033741 [exp]	1.0	0.9279
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Lus10018229 [exp]	1.4	0.9135
AT1G01250	AP2_ERF		Integrase-type DNA-binding sup...		Lus10005967 [exp]	2.4	0.8665
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Lus10011732 [exp]	5.7	0.8635
AT5G23210		SCPL34	serine carboxypeptidase-like 3...		Lus10017391 [exp]	6.9	0.8498
AT4G34770			SAUR-like auxin-responsive pro...		Lus10038192 [exp]	8.1	0.8506
AT3G05880		RCI2A	RARE-COLD-INDUCIBLE 2A, Low te...		Lus10014028 [exp]	11.3	0.8241
AT5G02890			HXXXD-type acyl-transferase fa...		Lus10040156 [exp]	12.0	0.8445
AT4G25960		ABCB2, PGP2	ATP-binding cassette B2, P-gly...		Lus10000910 [exp]	12.4	0.8344
					Lus10018873 [exp]	13.9	0.8025

Compare expression of checked genes

Lus10012718 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.