Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63770 895 / 0 ATDGK2 diacylglycerol kinase 2 (.1.2) AT5G07920 644 / 0 ATDGK1, DGK1 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) AT5G57690 135 / 8e-34 ATDGK4 diacylglycerol kinase 4 (.1) AT4G28130 133 / 4e-33 DGK6, ATDGK6 diacylglycerol kinase 6 (.1) AT4G30340 129 / 1e-31 ATDGK7 diacylglycerol kinase 7 (.1) AT2G18730 127 / 5e-31 ATDGK3 diacylglycerol kinase 3 (.1) AT2G20900 125 / 2e-30 DGK5, ATDGK5 diacylglycerol kinase 5 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010896 [exp] 1369 / 0 AT5G63770 955 / 0.0 diacylglycerol kinase 2 (.1.2) Lus10021625 [exp] 612 / 0 AT5G07920 1101 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Lus10003460 [exp] 570 / 0 AT5G07920 1050 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Lus10015742 [exp] 564 / 0 AT5G07920 1053 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Lus10034701 [exp] 367 / 2e-119 AT5G07920 746 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Lus10034702 [exp] 271 / 2e-86 AT5G07920 400 / 8e-137 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Lus10031612 [exp] 127 / 1e-30 AT2G20900 719 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Lus10019987 [exp] 125 / 4e-30 AT4G30340 713 / 0.0 diacylglycerol kinase 7 (.1) Lus10015514 [exp] 125 / 5e-30 AT4G30340 707 / 0.0 diacylglycerol kinase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G097900 [exp] 953 / 0 AT5G63770 933 / 0.0 diacylglycerol kinase 2 (.1.2) Potri.005G070900 [exp] 936 / 0 AT5G63770 897 / 0.0 diacylglycerol kinase 2 (.1.2) Potri.012G066300 [exp] 652 / 0 AT5G07920 1154 / 0.0 DIACYLGLYCEROL KINASE 1, diacylglycerol kinase1 (.1) Potri.001G408500 [exp] 125 / 3e-30 AT2G20900 695 / 0.0 diacylglycerol kinase 5 (.1.2.3.4) Potri.018G096700 [exp] 122 / 2e-29 AT2G18730 702 / 0.0 diacylglycerol kinase 3 (.1) Potri.006G174700 [exp] 121 / 4e-29 AT4G30340 670 / 0.0 diacylglycerol kinase 7 (.1) Potri.013G148500 [exp] 122 / 6e-29 AT2G20900 765 / 0.0 diacylglycerol kinase 5 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00609 [flax] [poplar] DAGK_acc Diacylglycerol kinase accessory domain CL0240 [flax] [poplar] PFK PF00781 [flax] [poplar] DAGK_cat Diacylglycerol kinase catalytic domain CL0006 [flax] [poplar] C1 PF00130 [flax] [poplar] C1_1 Phorbol esters/diacylglycerol binding domain (C1 domain)
Representative CDS sequence Show only first row Show all	>Lus10012719 pacid=23148207 polypeptide=Lus10012719 locus=Lus10012719.g ID=Lus10012719.BGIv1.0 annot-version=v1.0 ATGATGTTTAAGGGAGGAATTTCGCTAGTTTGGAGGCTGACCAGCTCTGAATCCTATGGCCTATCACTTTTCCGGTGGTTCTTCAGTGGAGCATTGGGTC TTCTGGCGTTTGCATACGCGATTCTTATATGGCAGAGAAAGACATCACTTAATTGGGTTAAAGCAGCTGCTAGAGCGAAGAAAGAAGCTTGGAAGAAGCT GAATGTTCCTCAATCTTTTCATTCATGGATGGAGGATTTAGCTCAGATCCGGCTGCCTTCCACGTGCTGTGTTTGCCTCACTTCCCTGGTCTCTCCTACC GGTGCCTCGAAATCTGCTTCGAAAACTTCTGTCCACCGCTGCTCCGTTTGCGGAGTTGCAGCTCACTTCTACTGTTCGGAATTTGCTGCAAAGGATTGCA AGTGTGTTGCACAAGCTGGTTTCAGTCAAGTTCAACATCAGTGGTCGGAGAGGTGGTCTAAAATGGAGGAAATCTCAGAGATGTCTGCATTTTGCTGCTA CTGTGATGATCCATGTGGTGTACCTTTCGTTAGCGACTCGCCCACATGGCACTGCTTGTGGTGTCAGCGCCTTATACATGTTAAATGCCACGCTAGGATG TCAAAAGAATCCGGGGATGTTTGTGATTTGGGCCCTCTAAGTAGGATTATTCTTTCTCCACTCTGTGTAAAGGACTTTGAAGATCGAAGCTCTTCCTGTT CCACCCCAGAGGAAATTCCGGCTTCTTCATTTCGTGGACACATCAGAAGGAGACGCACTCGGGCTAAAAATGGGAATAGTTTCTCTGCAAATGGTAGGCT GCAAGACGCATCAGCTACAACCAAGGCCCTAGACTATTTACTCAGTGGGCTTGTTAATCTGAAGAAGTCAGGATACGACAAAACCATCAATTGTTCCAAG AGAGATGGCAGATCTAAAGGAGATGGTGATGGATTGACACACAAGAAAGATGGTACTACCTTCAACAGCCAACTAAAAAAATATGCTTTGGTCAATCTAG CTCAGGATGCTAGACCCCTTCTTGTTTTCATTAATTTCAAGAGCGGAGGTCAACTCGGTTCTTCTCTGCGAAGCAGGCTGAACTTGCTGTTAAATCCCGC CCAGGTATTCGAACTGAGTTCTTCTCAGGGGCCTGAAGCAGGTTTGCAATTGTTCAGCGATGTACAGTATTTCCGGATTCTAGTTTGTGGTGGAGATGGA ACAGTTGCATGGGTCCTTGATGCAATTGAGAGGCTTAATTTTGAATCCCCTCCACCTGTTGCTGTCCTACCTCTCGGTACTGGAAATGATCTGTCACGGG TATTGCAGTGGGGTAGAGGTTTCAAAATGGCTAAGCGACAAGGTGGCTTATGTGCAGTCTTGCATGAGGTTGACCATGCTGCTGTTACAATGCTAGATAG ATGGAAAGTAAATATCATAGAAGAGAACCTAGATGGACAGACGAAAAACGAGCAATCAAAGTTCATGATAAACTATTTAGGTATTGGATGCGATGCGAAA CTAGCGTACGAGTTTCATGTAACTCGCCAGGAAAAGCCTGAAAAATTTAGTAGTCAGTTTGTCAATAAATTACGGTACGCTAAAGAAGGAGCGAGGGACA TAATGGACAGAGCTTGTGCAGATTTGCCATGGCAAGTGTGGCTTGAAGTTGATGGAAAGGACGTTCAGATTCCAAAGGACACTGAAGGTTTGATTGTCCT CAACATTGGCAGCTACATGGGTGGAGTAGATCTATGGCAAAATGATTACGAGCATGACGACGAGTTCACCCTTCAATCCATGCAAGATAAAATGCTCGAG ATCGTATGCGTTCGTGGAGCGTGGCACCTTGGCAAGATCCAGGTTGGACTCTCACAAGCAACGAGGCTAGCCCAAGGGAATGTTATAAGAATACATGCTT CGAGTTCTTTCCCAGTCCAGATAGATGGAGAGCCATTCATCCATCAACCAGGTTGCTTGGAAATCAAACACGACCAGCAGGTGTTCATGTTGAGGAGGAC GTTGGAGGAGCCGAGAGGGCACGCAGTCGCGATAATGACCGAAGTACTGGCAGACGCAGAGTGCAAAGGTATCATCAACACTTCCCAAAGGAAAATCTTG CTCCAGCAGTTGGCTTTAAACCTCTCCTGA
AA sequence Show only first row Show all	>Lus10012719 pacid=23148207 polypeptide=Lus10012719 locus=Lus10012719.g ID=Lus10012719.BGIv1.0 annot-version=v1.0 MMFKGGISLVWRLTSSESYGLSLFRWFFSGALGLLAFAYAILIWQRKTSLNWVKAAARAKKEAWKKLNVPQSFHSWMEDLAQIRLPSTCCVCLTSLVSPT GASKSASKTSVHRCSVCGVAAHFYCSEFAAKDCKCVAQAGFSQVQHQWSERWSKMEEISEMSAFCCYCDDPCGVPFVSDSPTWHCLWCQRLIHVKCHARM SKESGDVCDLGPLSRIILSPLCVKDFEDRSSSCSTPEEIPASSFRGHIRRRRTRAKNGNSFSANGRLQDASATTKALDYLLSGLVNLKKSGYDKTINCSK RDGRSKGDGDGLTHKKDGTTFNSQLKKYALVNLAQDARPLLVFINFKSGGQLGSSLRSRLNLLLNPAQVFELSSSQGPEAGLQLFSDVQYFRILVCGGDG TVAWVLDAIERLNFESPPPVAVLPLGTGNDLSRVLQWGRGFKMAKRQGGLCAVLHEVDHAAVTMLDRWKVNIIEENLDGQTKNEQSKFMINYLGIGCDAK LAYEFHVTRQEKPEKFSSQFVNKLRYAKEGARDIMDRACADLPWQVWLEVDGKDVQIPKDTEGLIVLNIGSYMGGVDLWQNDYEHDDEFTLQSMQDKMLE IVCVRGAWHLGKIQVGLSQATRLAQGNVIRIHASSSFPVQIDGEPFIHQPGCLEIKHDQQVFMLRRTLEEPRGHAVAIMTEVLADAECKGIINTSQRKIL LQQLALNLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G63770		ATDGK2	diacylglycerol kinase 2 (.1.2)		Lus10012719 [exp]	0	1
AT5G63770		ATDGK2	diacylglycerol kinase 2 (.1.2)		Lus10010896 [exp]	1.0	0.9129
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Lus10004217 [exp]	2.0	0.8617
AT2G29680		CDC6, ATCDC6	cell division control 6 (.1.2)		Lus10011627 [exp]	12.0	0.8311
AT2G07560		AHA6	H\(+\)-ATPase 6, H\(+\)-ATPase...		Lus10002325 [exp]	15.5	0.8530
AT2G36010	E2F_DP	ATE2FA, E2F3	E2F transcription factor 3 (.1...		Lus10029421 [exp]	20.5	0.8312
AT4G28550			Ypt/Rab-GAP domain of gyp1p su...		Lus10022905 [exp]	22.6	0.7941
AT1G29630			5'-3' exonuclease family prote...		Lus10011991 [exp]	23.7	0.8428
AT2G02955		MEE12	maternal effect embryo arrest ...		Lus10004454 [exp]	24.0	0.7639
AT3G17430			Nucleotide-sugar transporter f...		Lus10017115 [exp]	27.0	0.8046
AT5G64030			S-adenosyl-L-methionine-depend...		Lus10019644 [exp]	41.0	0.7995

Compare expression of checked genes

Lus10012719 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.