Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22620 686 / 0 Rhamnogalacturonate lyase family protein (.1.2) AT4G37950 653 / 0 Rhamnogalacturonate lyase family protein (.1) AT4G38030 650 / 0 Rhamnogalacturonate lyase family protein (.1) AT4G24430 650 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09910 629 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09890 618 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09880 617 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G65210 197 / 1e-58 Galactose-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023106 [exp] 794 / 0 AT2G22620 611 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10004281 [exp] 692 / 0 AT2G22620 818 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10019231 [exp] 680 / 0 AT2G22620 800 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10039627 [exp] 672 / 0 AT2G22620 785 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10029552 [exp] 630 / 0 AT2G22620 740 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10028212 [exp] 624 / 0 AT1G09890 981 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10005979 [exp] 560 / 0 AT1G09880 767 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10030233 [exp] 552 / 0 AT4G24430 776 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10000684 [exp] 543 / 0 AT1G09910 842 / 0.0 Rhamnogalacturonate lyase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G218500 [exp] 711 / 0 AT2G22620 842 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.014G004500 [exp] 702 / 0 AT2G22620 807 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.002G110100 [exp] 655 / 0 AT1G09890 810 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110000 [exp] 645 / 0 AT1G09890 968 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.005G151500 [exp] 643 / 0 AT1G09910 979 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110300 [exp] 626 / 0 AT4G24430 929 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110200 [exp] 624 / 0 AT1G09890 892 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.011G006200 [exp] 593 / 0 AT1G09910 663 / 0.0 Rhamnogalacturonate lyase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF06045 [flax] [poplar] Rhamnogal_lyase Rhamnogalacturonate lyase family
Representative CDS sequence Show only first row Show all	>Lus10012720 pacid=23148165 polypeptide=Lus10012720 locus=Lus10012720.g ID=Lus10012720.BGIv1.0 annot-version=v1.0 ATGAAATTCCGGATACTATCGTTCATCTGTTTCGTGTTTGCGGCATTACCATTCAATGCCGCTTTGGGTTTACCGGGGGCGATACCTGTGCCGGCAGGGA ACATCGTCCCCGCCAGTCCGGTGAAAGTCACGACGGAGAAAGAGCATGTGCTTATTGACAATGGGGAAATAGAAGTAAAGTTGGCGAATCCAGAAGGGTT CTTGGTTGGTATAAAGTACAAAGGAATTGATAACGTTATGGAAACCCATGAGCCTGAAGACTACGGCGGGTATTATGACGTGTCATGGGATGTGCCAGGA GGGAAAGGACAGACTGAACAGGTGGTGGGAACAAAATTTACTGTGGTAACAGAAAATGAAAATCAAGTGGAAGTGTCTTTCTGCAGAGTATGGGACTCTT CTAACAAAGCCCAAGTACCACTTAATGTGGACAAAAGGTTCATAGTACAAAAGGGTGTTTCCGGATTTTACTGGTACGTTATAGTGGAACGACTGAAAGG ATGGCCTGATGTCGACATGGATCAACACAGGATGGTGTTCCGACCACTGATAAAAATGTTCAAATATATGGCAGTATCGGACGAGATACAAAGGATAATG CCGGCTTACAATGATCGCATTACTGGAAAACCGCTTGCGTACCCTGAAGCCGTGCTCCTGACAAACCCGGTTGACCCGGAAATGAAAGAACAAGTGGACG ACAAGTACGAATACTCCATGGAAATGAAAGATCATAAGTTGAAAGGATGGATTTCAGAAGATCCCAAAGTCGGGTTTTGGGTGATCTCGCCGAGTGAGGA GTATGCCGCCGGTGGCCCTAACAAGCCTGAGCTTACTTGTCACTCTGGACCCATTGCACTTGCTATGTTTACCAGTGTACACTATGCGGGATTGGATATG ACAACAGAGTACAGAAACGGAGAGCCGTGGAAGAAAGTATTTGGTCCTGTGTTCATCTATCTCAACTCCATTGTTCCATCTAACGACTATGCTGCTCTTT GGAAAGATGCAAAAGCTCAGATGGAGAAAGAAGTACAAAACTGGCCATACAGTTTCGTTCAATCTGAAGACTATCTTCCTGCTGCTAAACGAGGCACCGT CTCTGGCCAATTGCTCGTCGATGACAAATGTTTAAGTCCGACTCCGAAAGAGGGATGCAAAGCATATGTGGGTTTGGCACTGCCAGGGATTGAGGGCTCG TGGCAATTAGAAGTCAAGGGTTATCAACATTGGACGGAGGCCGACGAGAAAGGAAATTTTGTGATCAAGAACGTAAACCCCGGAACATACAACTTGTACG GTTGGGTTCCAGGGGTCGTTGGCGATTTCAAGCATCCCGAGGTTATCAACGTCCAAGCAGGAAATGAGGTTAAATTAGGACCGGTTACTTACAAATCCCC AAGAAATGGTCCTACATTATGGGAAATCGGCATTCCAGATCGTTCTGCGGCCGAGTTTTACGTTCCAGACCCAAATCCTCAGTATGTAAACAAGTTTTTC CTCGACAAACCAAATGACAAGTATAGGCAATACGGATTATGGGAGCGATATGCCGAAATATACCCTAAGGACGATCTGGTTTTCGAAGTTGGTAAGAGTA ATTACAGTAAAGACTGGTTCTATGCTCATGTCTTAAGAGAATCCGGGCCGAAAAACTACATACCAACCCCGTGGCAGATTGTTTTCGACCTTCCTGACGT ACCCGCAGCAGGAAATTACACTCTTCAACTAGCATTGGCTTCGGCAGATGAAACTAACATATTTATTTATGTAAACAACTTAAACGCCAAAGCTCCGGCG TTTATGACACAGAGAGTAGGAAAGGATAACGCGATTGCAAGGCATGGGATCCACGGAGTTTACAAGTTCTTCAGCGCGTGTCTACCTTCAAATATGTTCG TAAAGGGTAGGAATACAATTTACCTCAAGCAAGCGAGAGGAGGAGAATTTGCCTTTTCGGGAGTTATGTATGATTACATTCGTCTCGAAGGACCACCAGC GGGACCGTAA
AA sequence Show only first row Show all	>Lus10012720 pacid=23148165 polypeptide=Lus10012720 locus=Lus10012720.g ID=Lus10012720.BGIv1.0 annot-version=v1.0 MKFRILSFICFVFAALPFNAALGLPGAIPVPAGNIVPASPVKVTTEKEHVLIDNGEIEVKLANPEGFLVGIKYKGIDNVMETHEPEDYGGYYDVSWDVPG GKGQTEQVVGTKFTVVTENENQVEVSFCRVWDSSNKAQVPLNVDKRFIVQKGVSGFYWYVIVERLKGWPDVDMDQHRMVFRPLIKMFKYMAVSDEIQRIM PAYNDRITGKPLAYPEAVLLTNPVDPEMKEQVDDKYEYSMEMKDHKLKGWISEDPKVGFWVISPSEEYAAGGPNKPELTCHSGPIALAMFTSVHYAGLDM TTEYRNGEPWKKVFGPVFIYLNSIVPSNDYAALWKDAKAQMEKEVQNWPYSFVQSEDYLPAAKRGTVSGQLLVDDKCLSPTPKEGCKAYVGLALPGIEGS WQLEVKGYQHWTEADEKGNFVIKNVNPGTYNLYGWVPGVVGDFKHPEVINVQAGNEVKLGPVTYKSPRNGPTLWEIGIPDRSAAEFYVPDPNPQYVNKFF LDKPNDKYRQYGLWERYAEIYPKDDLVFEVGKSNYSKDWFYAHVLRESGPKNYIPTPWQIVFDLPDVPAAGNYTLQLALASADETNIFIYVNNLNAKAPA FMTQRVGKDNAIARHGIHGVYKFFSACLPSNMFVKGRNTIYLKQARGGEFAFSGVMYDYIRLEGPPAGP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10012720 [exp]	0	1
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Lus10030410 [exp]	1.0	0.9961
					Lus10016158 [exp]	2.0	0.8373
AT4G39670			Glycolipid transfer protein (G...		Lus10035024 [exp]	2.0	0.8796
					Lus10043436 [exp]	2.4	0.8612
AT5G17540			HXXXD-type acyl-transferase fa...		Lus10020332 [exp]	6.9	0.7793
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Lus10026179 [exp]	10.7	0.7965
					Lus10027680 [exp]	16.2	0.7529
					Lus10017835 [exp]	19.1	0.7383
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10041829 [exp]	19.6	0.7920
					Lus10018912 [exp]	19.9	0.7383

Compare expression of checked genes

Lus10012720 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.