Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80570 219 / 2e-70 RNI-like superfamily protein (.1.2.3) AT5G23340 46 / 3e-06 RNI-like superfamily protein (.1) AT4G15475 44 / 2e-05 F-box/RNI-like superfamily protein (.1) AT5G27920 42 / 0.0001 F-box family protein (.1) AT5G67250 40 / 0.0003 VFB4, SKIP2 VIER F-BOX PROTEINE 4, SKP1/ASK1-interacting protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002665 [exp] 294 / 2e-99 AT1G80570 662 / 0.0 RNI-like superfamily protein (.1.2.3) Lus10012764 [exp] 52 / 4e-08 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10034013 [exp] 43 / 6e-05 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10036412 [exp] 43 / 6e-05 AT3G07550 417 / 4e-145 RNI-like superfamily protein (.1.2) Lus10041087 [exp] 41 / 0.0002 AT3G07550 417 / 2e-145 RNI-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G053400 [exp] 255 / 2e-84 AT1G80570 699 / 0.0 RNI-like superfamily protein (.1.2.3) Potri.005G088800 [exp] 46 / 4e-06 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.013G013100 [exp] 45 / 8e-06 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.005G022600 [exp] 43 / 5e-05 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.006G105400 [exp] 40 / 0.0003 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012721 pacid=23148188 polypeptide=Lus10012721 locus=Lus10012721.g ID=Lus10012721.BGIv1.0 annot-version=v1.0 ATGGATATTCTACCGGACCAATTGGTTTGGGAGATCTTAACCAGAATCAAGAAAACTTCACACAGAAACCACATCTCCTTGGCATGTAAGCGGCTCCACG ATCTAGACGGAGAAGAGAGGCAATCTCTCCGAGTCGGTTGCGGATTACACCCCGCGAATCGAGCATTGACATCTCTATGCAACAGATTCCCAAATTTAAA GAAAGTTGAGATTACATACGCTGGTTGGATGTCCAAGTTAGGTAGACAACTAGACGATCAGGGGCTGTCGATTCTCGCCACCAACTGCCATTCGTTGAAA GATCTCACCTTAAGCTTCTGCACCTTCATCACTGATGTCGGTCTCCGTTGCTTAGCTTCTTGCTCCAAGCTTTCCTCCCTGAAGCTGAACTTCACACCGA GGATCACTGGTTGCGGTGTGTTGTCCGTTGTTGTAGGCTGCAAAAACTTGACGATTCTGTGTCTTATCCGGTGCCTTAATGTGACGAGTGTAGAGTGA
AA sequence Show only first row Show all	>Lus10012721 pacid=23148188 polypeptide=Lus10012721 locus=Lus10012721.g ID=Lus10012721.BGIv1.0 annot-version=v1.0 MDILPDQLVWEILTRIKKTSHRNHISLACKRLHDLDGEERQSLRVGCGLHPANRALTSLCNRFPNLKKVEITYAGWMSKLGRQLDDQGLSILATNCHSLK DLTLSFCTFITDVGLRCLASCSKLSSLKLNFTPRITGCGVLSVVVGCKNLTILCLIRCLNVTSVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80570			RNI-like superfamily protein (...		Lus10012721 [exp]	0	1
AT4G02280		ATSUS3, SUS3	sucrose synthase 3 (.1)		Lus10008205 [exp]	23.2	0.8393
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10004781 [exp]	67.0	0.8238
AT5G07270		XBAT33	XB3 ortholog 3 in Arabidopsis ...		Lus10005754 [exp]	68.6	0.8303
AT2G18570			UDP-Glycosyltransferase superf...		Lus10041713 [exp]	95.7	0.8302
AT5G06760		AtLEA4-5, LEA4-...	Late Embryogenesis Abundant 4-...		Lus10012009 [exp]	117.3	0.8106
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10001050 [exp]	121.0	0.7946
AT5G39190		ATGER2, GLP2A	GERMIN-LIKE PROTEIN 2A, A. THA...		Lus10004780 [exp]	139.9	0.7937
AT4G28940			Phosphorylase superfamily prot...		Lus10034939 [exp]	145.8	0.7956
AT3G07550			RNI-like superfamily protein (...		Lus10036412 [exp]	189.1	0.8108
AT2G48110		MED33B, REF4	reduced epidermal fluorescence...		Lus10000663 [exp]	200.0	0.7960

Compare expression of checked genes

Lus10012721 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.