Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80570 375 / 2e-129 RNI-like superfamily protein (.1.2.3) AT4G15475 61 / 3e-10 F-box/RNI-like superfamily protein (.1) AT2G25490 56 / 2e-08 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT1G21410 54 / 4e-08 SKP2A F-box/RNI-like superfamily protein (.1) AT5G25350 50 / 8e-07 EBF2 EIN3-binding F box protein 2 (.1) AT5G23340 46 / 2e-05 RNI-like superfamily protein (.1) AT5G27920 45 / 5e-05 F-box family protein (.1) AT3G58530 44 / 8e-05 RNI-like superfamily protein (.1) AT5G01720 43 / 0.0002 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002665 [exp] 516 / 0 AT1G80570 662 / 0.0 RNI-like superfamily protein (.1.2.3) Lus10012764 [exp] 60 / 6e-10 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10002913 [exp] 52 / 3e-07 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10030102 [exp] 52 / 3e-07 AT2G25490 683 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002165 [exp] 49 / 2e-06 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002014 [exp] 48 / 5e-06 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10034013 [exp] 46 / 3e-05 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10040998 [exp] 45 / 3e-05 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 42 / 0.0004 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G053400 [exp] 443 / 4e-156 AT1G80570 699 / 0.0 RNI-like superfamily protein (.1.2.3) Potri.013G013100 [exp] 53 / 1e-07 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.006G105400 [exp] 50 / 8e-07 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.019G123400 [exp] 49 / 2e-06 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.006G254100 [exp] 48 / 5e-06 AT2G25490 795 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G027700 [exp] 45 / 4e-05 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.016G128400 [exp] 45 / 4e-05 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.005G022600 [exp] 44 / 7e-05 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.005G088800 [exp] 44 / 8e-05 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1) Potri.006G068500 [exp] 43 / 0.0002 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012722 pacid=23148206 polypeptide=Lus10012722 locus=Lus10012722.g ID=Lus10012722.BGIv1.0 annot-version=v1.0 ATGAAGCTGGGAGGTAGCTGGAGAAATCTGAAGAGATTACAGTTCGAGGTGGATGCGAATTACCGATACATGAAGGTTTACGACCGGCTAGCTGTCGATC AATGGCAAAATCAAGCTATACCGTGCGAATCGATGTTAGAGCTTAGCTTGGTGAACTGCATCATCAGTCCTGGGAGAGGGCTAGCTTGTGTGGTTGGGAA ATGCAAGAACTTGGAAAAGATCCATTTAGACATGTGTGTTGGCGTAAGGGATTCGGATATCGTCAACTTAGCAAAGGAATCGACTAATCTCCGTTCATTG TCCCTCCGAGTGCCTTCCGATTTCTCCTTACCGCTTCTGATGGGGAACCCGTTACGATTGACCGACGAGAGTCTCAAGGCAGTGGCGGAGAATTGCCCGA TGCTGGAATCTGTTCGGTTATCCTTCTCCGACGGAGAGTATCCCTCGTTCTCGTCCTTTACACTGGAAGGGATTCTGGTACTGGTTCAGATGTGTCCGAT TCGAGTACTGGCTCTTGACCATGTGCATTGCTTCAACGATGCTGGGATGGAAGCGCTGTGTTCGGCGCAGTGGCTCGAGAAGTTGGAGCTTGTGGGTTGC CATGAGGTGACTGATGAAGGGATGCAGCTTGTTACTCAGTTCCCTCGTCTGTGTGGATTGCTGTTAAGGAAGTGTTTGGGGATCACGAATAATGGGTTGA GTCCTCTTGTTGGGTCGTACAAGCTGGAATCCTTGGCTGTTGAGGATTGCCCTCAGATTTCTGAGAGGGCCATGAGTGGTGCTGCGAAGTCTGTGTCTTT CCGCCAGGACTTGTCTTGGATGTACTGA
AA sequence Show only first row Show all	>Lus10012722 pacid=23148206 polypeptide=Lus10012722 locus=Lus10012722.g ID=Lus10012722.BGIv1.0 annot-version=v1.0 MKLGGSWRNLKRLQFEVDANYRYMKVYDRLAVDQWQNQAIPCESMLELSLVNCIISPGRGLACVVGKCKNLEKIHLDMCVGVRDSDIVNLAKESTNLRSL SLRVPSDFSLPLLMGNPLRLTDESLKAVAENCPMLESVRLSFSDGEYPSFSSFTLEGILVLVQMCPIRVLALDHVHCFNDAGMEALCSAQWLEKLELVGC HEVTDEGMQLVTQFPRLCGLLLRKCLGITNNGLSPLVGSYKLESLAVEDCPQISERAMSGAAKSVSFRQDLSWMY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80570			RNI-like superfamily protein (...		Lus10012722 [exp]	0	1
AT1G12440			A20/AN1-like zinc finger famil...		Lus10008912 [exp]	17.2	0.8921
AT3G30390			Transmembrane amino acid trans...		Lus10035140 [exp]	19.7	0.8967
					Lus10006539 [exp]	24.8	0.8918
AT2G29410		ATMTPB1, MTPB1	metal tolerance protein B1 (.1...		Lus10016487 [exp]	31.0	0.8905
AT1G21780			BTB/POZ domain-containing prot...		Lus10042717 [exp]	35.0	0.8701
AT4G08230			glycine-rich protein (.1.2)		Lus10041619 [exp]	37.1	0.8642
AT5G58950			Protein kinase superfamily pro...		Lus10011173 [exp]	41.7	0.8597
AT1G58030		CAT2	cationic amino acid transporte...		Lus10020320 [exp]	44.5	0.8686
AT1G56700			Peptidase C15, pyroglutamyl pe...		Lus10001521 [exp]	50.5	0.8802
AT5G03380			Heavy metal transport/detoxifi...		Lus10014421 [exp]	51.4	0.8759

Compare expression of checked genes

Lus10012722 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.