Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38040 650 / 0 Exostosin family protein (.1) AT4G16745 270 / 2e-85 Exostosin family protein (.1.2) AT5G11610 268 / 2e-84 Exostosin family protein (.1.2) AT5G03795 252 / 1e-78 Exostosin family protein (.1) AT3G07620 245 / 1e-76 Exostosin family protein (.1) AT4G32790 238 / 1e-72 Exostosin family protein (.1) AT5G25820 238 / 7e-72 Exostosin family protein (.1) AT5G11130 233 / 9e-72 Exostosin family protein (.1) AT5G25310 227 / 1e-69 Exostosin family protein (.1) AT5G20260 224 / 2e-68 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002664 [exp] 807 / 0 AT4G38040 677 / 0.0 Exostosin family protein (.1) Lus10039142 [exp] 258 / 1e-80 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10013790 [exp] 253 / 2e-78 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10016058 [exp] 243 / 2e-77 AT5G03795 439 / 1e-152 Exostosin family protein (.1) Lus10008751 [exp] 248 / 7e-77 AT3G07620 542 / 0.0 Exostosin family protein (.1) Lus10023927 [exp] 245 / 8e-76 AT5G25820 561 / 0.0 Exostosin family protein (.1) Lus10011121 [exp] 237 / 1e-73 AT5G19670 730 / 0.0 Exostosin family protein (.1) Lus10002799 [exp] 239 / 2e-72 AT5G25820 627 / 0.0 Exostosin family protein (.1) Lus10025178 [exp] 234 / 5e-72 AT5G03795 471 / 5e-163 Exostosin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G058400 [exp] 669 / 0 AT4G38040 649 / 0.0 Exostosin family protein (.1) Potri.005G147500 [exp] 666 / 0 AT4G38040 653 / 0.0 Exostosin family protein (.1) Potri.007G117800 [exp] 387 / 8e-133 AT4G38040 385 / 4e-132 Exostosin family protein (.1) Potri.015G087900 [exp] 375 / 4e-128 AT4G38040 352 / 8e-119 Exostosin family protein (.1) Potri.007G116800 [exp] 346 / 1e-116 AT4G38040 333 / 4e-111 Exostosin family protein (.1) Potri.007G117600 [exp] 339 / 2e-114 AT4G38040 341 / 5e-115 Exostosin family protein (.1) Potri.019G036500 [exp] 277 / 7e-89 AT4G38040 275 / 9e-88 Exostosin family protein (.1) Potri.003G079000 [exp] 260 / 2e-81 AT4G16745 636 / 0.0 Exostosin family protein (.1.2) Potri.006G118000 [exp] 252 / 1e-78 AT5G03795 608 / 0.0 Exostosin family protein (.1) Potri.018G043700 [exp] 251 / 2e-76 AT5G25820 635 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [flax] [poplar] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Lus10012723 pacid=23148166 polypeptide=Lus10012723 locus=Lus10012723.g ID=Lus10012723.BGIv1.0 annot-version=v1.0 ATGTCGTCCGGCAAGTTTCAGCAACAATCCATGCTTAGTCTCAAAGGCTCCCTCCTTACTCTAGCATTCATAACCTCCTTCTACCTCATTTACCTCTCCC TTAACTCGCTCCACTCCTCACCTTCCCCCTCAGCTCCCTCTGTGATATCAGCCACCGAATCAGGAAAGCGAATCGTTCGTTCCAATACTTTCGCCAGTGA TGGCGAGGAGATAACGGATCTGTACCATTTCCCGGAGATATTCAGGCTGAACTACGCGGCGATGGAGGAGAATTTCAAGGTGTATATCTACCCTGACGGC GATCCGAACACGTTCTATCAGACTCCGAGGAAATTGACTGGGAAGTACGCGAGCGAGGGCTACTTCTTCCAGAATATCAGAGAGAGTAAGTTCCGGACTG AGGATCCGGATCAGGCTCACCTCTTCTTTATCCCGATTTCGTGTCACAAGATGAGGGGCAAGGGTACATCCTACGAAAATATGACCATCATTGTTCAGAA TTATGTGGACAGCTTGATAGTCAAGTATCCTTACTGGAACAGAACTCTTGGTGCAGATCACTTTTTTGTAACGTGCCATGATGTTGGTGTAAGGGCAACT GAAGGCGTTCCATTTCTAGTGAAAAATGCAATCCGAGCAGTATGCTCCCCTAGTTATGACGTTGGATTCATTCCACACAAAGATGTCGCGCTTCCTCAAA TCCTCCAGCCATTTGCCCTTCCAGCCGGAGGCAATGACGCTGAGAACAGGACTACTCTTGGGTTTTGGGCTGGCCATAGGAACTCTAAAATTAGGGTTAT CTTGGCAAGAGTTTGGGAAAATGACACAGAGCTTGATATTTCAAACAACAGAATAAGCAGAGCTACTGGGCATCTAGTATATCAGAAAAGATTTTACAAG ACTAAGTTCTGCATATGCCCTGGAGGTTCTCAGGTCAATAGTGCACGCATAACCGATTCAATCCACTATGGCTGTGTCCCTGTAATCTTATCGAACTACT ACGACTTGCCATTCAACGACATCATAGATTGGAACAAATTCGCGGTTGTACTCAAGGAGAAAGACGTGTATAACCTCAAGCAGATCCTCAAAGACATACC GGACGAACGGTTTGTTGAGTTGAATCGAAACGTAGCCAAGGTACAAAAGCACTTCCAGTGGAACTCTCCACCGATCAAGTACGATGCTTTCCACATGGTG ATGTACGATCTCTGGCTGCGTCGCCATGTCATCCGATACTAA
AA sequence Show only first row Show all	>Lus10012723 pacid=23148166 polypeptide=Lus10012723 locus=Lus10012723.g ID=Lus10012723.BGIv1.0 annot-version=v1.0 MSSGKFQQQSMLSLKGSLLTLAFITSFYLIYLSLNSLHSSPSPSAPSVISATESGKRIVRSNTFASDGEEITDLYHFPEIFRLNYAAMEENFKVYIYPDG DPNTFYQTPRKLTGKYASEGYFFQNIRESKFRTEDPDQAHLFFIPISCHKMRGKGTSYENMTIIVQNYVDSLIVKYPYWNRTLGADHFFVTCHDVGVRAT EGVPFLVKNAIRAVCSPSYDVGFIPHKDVALPQILQPFALPAGGNDAENRTTLGFWAGHRNSKIRVILARVWENDTELDISNNRISRATGHLVYQKRFYK TKFCICPGGSQVNSARITDSIHYGCVPVILSNYYDLPFNDIIDWNKFAVVLKEKDVYNLKQILKDIPDERFVELNRNVAKVQKHFQWNSPPIKYDAFHMV MYDLWLRRHVIRY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38040			Exostosin family protein (.1)		Lus10012723 [exp]	0	1
AT1G50430		ST7R, PA, LE, 7...	PARVA, LEPIDA, DWARF 5, DELTA5...		Lus10033356 [exp]	1.7	0.8987
AT5G10840			Endomembrane protein 70 protei...		Lus10042415 [exp]	9.5	0.8898
AT5G38460			ALG6, ALG8 glycosyltransferase...		Lus10017594 [exp]	11.2	0.8786
AT3G07950			rhomboid protein-related (.1)		Lus10041408 [exp]	13.3	0.8889
AT1G34130		STT3B	staurosporin and temperature s...		Lus10017990 [exp]	13.7	0.8871
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10042497 [exp]	14.1	0.8846
AT5G19760			Mitochondrial substrate carrie...		Lus10007883 [exp]	15.9	0.8817
AT2G17980		ATSLY1	Sec1/munc18-like (SM) proteins...		Lus10023936 [exp]	17.7	0.8810
AT3G13772		AtTMN7	transmembrane nine 7 (.1)		Lus10037643 [exp]	18.7	0.8754
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10037321 [exp]	18.7	0.8575

Compare expression of checked genes

Lus10012723 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.