Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15560 999 / 0 AtCLA1, DXS, DXPS2, DEF, CLA1 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) AT3G21500 847 / 0 DXPS1 1-deoxy-D-xylulose 5-phosphate synthase 1 (.1.2) AT5G11380 676 / 0 DXPS3 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) AT5G50850 56 / 5e-08 MAB1 MACCI-BOU, Transketolase family protein (.1) AT3G13450 50 / 5e-06 DIN4 DARK INDUCIBLE 4, Transketolase family protein (.1) AT3G60750 44 / 0.0005 Transketolase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002663 [exp] 1414 / 0 AT4G15560 1026 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10001322 [exp] 1057 / 0 AT4G15560 1021 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10015517 [exp] 1056 / 0 AT4G15560 1020 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10006984 [exp] 1056 / 0 AT4G15560 1023 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10019991 [exp] 1055 / 0 AT4G15560 1018 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10012789 [exp] 983 / 0 AT4G15560 1229 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10033987 [exp] 910 / 0 AT4G15560 1134 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Lus10013117 [exp] 704 / 0 AT5G11380 958 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Lus10008084 [exp] 704 / 0 AT5G11380 960 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G058500 [exp] 1220 / 0 AT4G15560 999 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.006G171700 [exp] 1070 / 0 AT4G15560 1037 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.008G196500 [exp] 991 / 0 AT4G15560 1207 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.010G015200 [exp] 981 / 0 AT4G15560 1227 / 0.0 1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2, CLOROPLASTOS ALTERADOS 1, Deoxyxylulose-5-phosphate synthase (.1) Potri.006G249700 [exp] 722 / 0 AT5G11380 949 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Potri.018G031800 [exp] 705 / 0 AT5G11380 958 / 0.0 1-deoxy-D-xylulose 5-phosphate synthase 3 (.1.2) Potri.003G166400 [exp] 60 / 3e-09 AT5G50850 636 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.001G061400 [exp] 59 / 8e-09 AT5G50850 640 / 0.0 MACCI-BOU, Transketolase family protein (.1) Potri.010G224600 [exp] 51 / 3e-06 AT3G60750 764 / 0.0 Transketolase (.1.2) Potri.003G222800 [exp] 45 / 0.0002 AT1G55510 632 / 0.0 branched-chain alpha-keto acid decarboxylase E1 beta subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0254 [flax] [poplar] THDP-binding PF00676 [flax] [poplar] E1_dh Dehydrogenase E1 component CL0254 [flax] [poplar] THDP-binding PF02779 [flax] [poplar] Transket_pyr Transketolase, pyrimidine binding domain CL0591 [flax] [poplar] TKC_like PF02780 [flax] [poplar] Transketolase_C Transketolase, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10012724 pacid=23148218 polypeptide=Lus10012724 locus=Lus10012724.g ID=Lus10012724.BGIv1.0 annot-version=v1.0 ATGGCGGTTTCTCACTGCTCTGTCTCTCTCCTCAACCAGTCTCTCTCTCCCTTCCTCAAAGCTCCGCGATCTTCGTCACTACCATGCTCCAGGAAGCCGT TCAATCTGAGAGCTTGTGTTGGGGAAGGAGAAGAAGAAGAGAAAATGGTGATCAGGAAGGAGAAAGAGGGGAAATGGAAGATTGATTTCTCAGGGGAGAA ACCACCCACTCCGCTTCTTGATACTGTCAATTACCCTGTTCATATGAAGAATCTCTCCACACAGGATTTGGAGCAACTGGCGGCGGAGATGAGGGCGGAG ATAGTGTACGGGGTGGCGAAAACCGGAGGGCATTTAAGTTCGAGCTTGGGGGTTGTGGAGTTGTCTGTGGCTCTGCATCATGTTTTCAGTACTCCTGATG ATAAGATCATCTGGGATGTTGGCCATCAGGCATATGCACACAAGATTCTTACAGGAAGAAGGTCAAAGATGCACACCATAAGAAAGACATCAGGACTCGC AGGTTTCCCCAAAAGAGACGAGAGCGAGCATGATGCTTTTGGTGCGGGACACAGCTCCACCAGTATCTCTGCTGGCCTTGGAATGGCTGTGGCCAGAGAC TTATTGGGTAAGAAGAACAATGTGATATCAGTGATTGGAGATGGTGCAATGACAGCAGGCCAAGCTTATGAAGCCATGAACAATGCCGGCTTCCTCGACT CGAATATGATCGTAATCCTCAATGATAACAAGCAAGTTTCGTTACCTACCGCTACTCTCGATGGCCCTGCAACTCCTGTTGGAGCTCTCAGCAGTGCTCT CACGAAGCTTCAGGCCAGCACCAAGTTCCGCAAGCTTCGCGAGGCTGCCAAAAGCATTACAAAGCAAATCGGAAGCCAAGCGCACGAAGTTGCGGCGAAG GTGGACGAGTATGCGAGAGGGATGATCAGTGCGTCGGGGTCGACACTTTTCGAGGAGCTCGGATTGTACTACATTGGTCCGGTCGATGGGCACAATGTCG AAGATCTGGTGACGATTTTCGAGAAGGTGAAAGCGATGCCGGCTCCTGGACCGGTTCTCATCCACATTGTTACAGAGAAGGGCAAAGGGTATCCTCCTGC TGAGGCTGCTGCCGATAAGATGCATGGAGTTGTGAAGTTTGATGTGAAAACTGGGGAGCAATTCAAGACCAAGTCCCCAACACTTCCATACACAAGATAC TTTGCTGAATCACTGCTGAAAGAAGCTGAAGCAGACAGCAAGATCGTTGCTATCCATGCTGCTATGGGTGGTGGGACTGGTCTCAATTATTTCCAGAAGA AGTTCCCGGCTCGATGCTTCGATGTCGGGATCGCAGAGCAGCATGCTGTTACTTTTGCAGCTGGGTTAGCTGCTGAGGGTATGAAGCCTTTCTGTGCTAT CTACTCATCCTTCCTCCAAAGAGGCTATGATCAGGTTGTACATGATGTGGATCTTCAGAAGCTACCAGTCCGGTTCGCAATGGACAGAGCCGGTTTGGTC GGAGCAGATGGACCGACTCACTGTGGAGCATTCGACATCACCTACATGGCTTGCTTACCGAACATGGTGGTGATGGCACCATCCGATGAAGCTGAGTTGA TGCACATGGTTGCAACTGCTGCAGCCATAGATGACAGACCAAGCTGCTTCAGGTTCCCTAGAGGCAATGGAGTTGGAGCACTTCTCCCCCTTCATAACAA AGGAACTCCTCTTGAGGTCGGCAAGGGAAGAATAGTGATGGAAGGAAGCAGAGTTGCGATTCTAGGATACGGAACCATAGTCCAGCAATGCTTGGAAGCT GGGAGGATGCTGAGAAGCAGAGATGTCAATGTGACAGTAGCAGATGCAAGGTTCTGCAAGCCTCTGGATACTGAATTGATAAAGCAACTGGCCAAAGAGC ATGAGATTCTCATCACTGTGGAAGAAGGTTCCATTGGAGGCTTCAGCTCTCATGTGGCTCACTACTTAAGTTTAAGTGGCATTCTTGATGGACCCCTTAA GTTGAGAGCAATGGTGCTTCCGGACAGATACATCGATCATGGATCAGCTGAGGATCAGATTCAAGAAGTAGGACTTTCGTCAAAGCACATAACTGCAACA GTACTGTCTCTATTGGGGACACCCAAAGAAGCCTTCGAATTCAAGTAA
AA sequence Show only first row Show all	>Lus10012724 pacid=23148218 polypeptide=Lus10012724 locus=Lus10012724.g ID=Lus10012724.BGIv1.0 annot-version=v1.0 MAVSHCSVSLLNQSLSPFLKAPRSSSLPCSRKPFNLRACVGEGEEEEKMVIRKEKEGKWKIDFSGEKPPTPLLDTVNYPVHMKNLSTQDLEQLAAEMRAE IVYGVAKTGGHLSSSLGVVELSVALHHVFSTPDDKIIWDVGHQAYAHKILTGRRSKMHTIRKTSGLAGFPKRDESEHDAFGAGHSSTSISAGLGMAVARD LLGKKNNVISVIGDGAMTAGQAYEAMNNAGFLDSNMIVILNDNKQVSLPTATLDGPATPVGALSSALTKLQASTKFRKLREAAKSITKQIGSQAHEVAAK VDEYARGMISASGSTLFEELGLYYIGPVDGHNVEDLVTIFEKVKAMPAPGPVLIHIVTEKGKGYPPAEAAADKMHGVVKFDVKTGEQFKTKSPTLPYTRY FAESLLKEAEADSKIVAIHAAMGGGTGLNYFQKKFPARCFDVGIAEQHAVTFAAGLAAEGMKPFCAIYSSFLQRGYDQVVHDVDLQKLPVRFAMDRAGLV GADGPTHCGAFDITYMACLPNMVVMAPSDEAELMHMVATAAAIDDRPSCFRFPRGNGVGALLPLHNKGTPLEVGKGRIVMEGSRVAILGYGTIVQQCLEA GRMLRSRDVNVTVADARFCKPLDTELIKQLAKEHEILITVEEGSIGGFSSHVAHYLSLSGILDGPLKLRAMVLPDRYIDHGSAEDQIQEVGLSSKHITAT VLSLLGTPKEAFEFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10012724 [exp]	0	1
AT1G13080		CYP71B2	"cytochrome P450, family 71, s...		Lus10043312 [exp]	1.0	0.9949
AT1G14550			Peroxidase superfamily protein...		Lus10009900 [exp]	1.4	0.9946
AT1G14540			Peroxidase superfamily protein...		Lus10009904 [exp]	2.4	0.9922
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10005107 [exp]	2.8	0.9921
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008917 [exp]	4.5	0.9912
AT5G62020	HSF	AT-HSFB2A	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10011185 [exp]	5.7	0.9869
AT1G55570		SKS12	SKU5 similar 12 (.1)		Lus10010338 [exp]	6.9	0.9836
AT5G39150			RmlC-like cupins superfamily p...		Lus10006536 [exp]	8.5	0.9846
AT1G14540			Peroxidase superfamily protein...		Lus10000003 [exp]	8.5	0.9801
					Lus10005629 [exp]	10.1	0.9899

Compare expression of checked genes

Lus10012724 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.