Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22600 207 / 2e-58 RNA-binding KH domain-containing protein (.1) AT1G51580 125 / 5e-30 RNA-binding KH domain-containing protein (.1) AT5G64390 109 / 1e-24 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT5G53060 75 / 7e-14 RNA-binding KH domain-containing protein (.1.2) AT5G15270 73 / 3e-13 RNA-binding KH domain-containing protein (.1.2) AT5G46190 67 / 3e-11 RNA-binding KH domain-containing protein (.1) AT5G09560 66 / 5e-11 RNA-binding KH domain-containing protein (.1) AT3G04610 65 / 9e-11 FLK flowering locus KH domain, RNA-binding KH domain-containing protein (.1) AT4G26000 64 / 1e-10 PEP PEPPER, RNA-binding KH domain-containing protein (.1) AT4G18375 56 / 6e-08 RNA-binding KH domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002662 [exp] 838 / 0 AT2G22600 137 / 3e-34 RNA-binding KH domain-containing protein (.1) Lus10035640 [exp] 137 / 2e-33 AT5G64390 337 / 8e-104 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10010754 [exp] 120 / 3e-28 AT5G64390 311 / 5e-94 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10034831 [exp] 93 / 2e-19 AT1G51580 409 / 2e-134 RNA-binding KH domain-containing protein (.1) Lus10007236 [exp] 78 / 1e-14 AT5G64390 249 / 6e-73 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10028237 [exp] 77 / 3e-14 AT5G64390 243 / 8e-71 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10005915 [exp] 75 / 8e-14 AT5G53060 599 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10030689 [exp] 74 / 1e-13 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10022390 [exp] 73 / 3e-13 AT5G53060 692 / 0.0 RNA-binding KH domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G012000 [exp] 271 / 3e-83 AT2G22600 325 / 3e-104 RNA-binding KH domain-containing protein (.1) Potri.007G011900 [exp] 253 / 2e-72 AT2G22600 295 / 2e-87 RNA-binding KH domain-containing protein (.1) Potri.017G042500 [exp] 147 / 6e-37 AT5G64390 345 / 1e-106 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Potri.007G116300 [exp] 146 / 1e-36 AT5G64390 225 / 2e-62 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Potri.010G251700 [exp] 110 / 4e-25 AT1G51580 434 / 9e-145 RNA-binding KH domain-containing protein (.1) Potri.002G112200 [exp] 89 / 4e-18 AT5G53060 243 / 7e-71 RNA-binding KH domain-containing protein (.1.2) Potri.004G123400 [exp] 87 / 1e-17 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.015G011100 [exp] 79 / 5e-15 AT5G53060 699 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.012G017200 [exp] 76 / 5e-14 AT5G53060 656 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.004G066100 [exp] 66 / 4e-11 AT4G18375 558 / 0.0 RNA-binding KH domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10012725 pacid=23148226 polypeptide=Lus10012725 locus=Lus10012725.g ID=Lus10012725.BGIv1.0 annot-version=v1.0 ATGAACGGAGCAGAGCACCGCGTGGTGGTCGTGGTTGGTTCGAGCACTCCCGAGCAGCGTCTCTTGCTGGAGGAGGACTGCGAAGAGCTCGTTTCCAATG CGCAGGAGGCTGTGCTGAGGGTTGTGGAGCGGATGTGGCAGGGGGGGGGGCGGGGGGGGGGGGGGGGTGTTGTGGTGTGGTGTGTTCGGGGGCGTGGCGT NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAGGGCAAGGAGGAAGGACGATCACGAAGTTGAAGAAAGTAAGTGGAGCTCATATAAAT ATTCTTCCGCCACCGCCTTGTGCTTCCCCAGACGAGCAATTGATTCAGATTACTGGTTCAGTTGTATCTGTAAAGAGAGCGATTATTGTAGTTACTGGCT GCCTTCAAAACTTTCTTCAACGCGAGAGAGATCAAATTCCAATGACAGTGAGACCTATTGAGAGGAGATCGTCTTCTTCGAAGACATCTCATGACCAGCA TTTGCAGTTCTTTCCACATCTTAGTTCAATGTTGACACCATCTGATGATACATGTTCCTCATTGAGCAATGGCAAGGAAAAAATATTGAAAGATGCAAAA GGCGGTAAGGAGGAAGTATCATTCAGGCTGCTTGTTTCAGAAAGTGCAGCTGGATGCATAATTGGCAGAGCAGGGTCTGTAGTCAAGTCTCTGCAGGATC GCACTGGTGCATCTATCCGAGTTGCACCTTCGAGAACTAAATCCTGGGAGAGGGTAGTCACTGTTTCGGCGTTGGAGAATGAGGAATCGAGGTATTCTCC TGCACAGACTGCTGCCCTTCTAGTCTTTGGTAGATCTATTGAGAATGATTTTGAAAAGGCACGTTCATCAGGCTCCATTGAAGGCACTAATGTATCTGCG AGGTTACTAGTTGATATGGTCTACATCCGTTGTCTCGCCACTAATGGTTTGATTGAAGCTGAAGTTACTGAAGGTGCTGCTTTCAAAGTACATCGTTTGG AGGATAATTACATTAGAGATGATGTTATTCTGGAGATTACTGGAGAGTATAAAAATGTTACAAAGACTCTTACACGAGTAGTTAGCAAACTAAGGGAAAA TGTCTTCACAAGTAACATGCTCGAGGTAGCAAGCTCTAGTAGCTCTACCGGAAGAGTGACGGATGCTACTACTCCTACATTGTTACAATCTAGTCAAAGT GTCGAATCTAGTCAGCGTGGTTCCTGCGAAAGCATAGATGAGCAACTAGGAGGAGGAGCGACTGGAATCATTGACTCCTCTGACGGAAATGGCATGGCTT CCCCGAGTCAGGTCTCGGAAATAGAAAGATTCCTACGCTTTTTGCCCAGGCAAGGGGTCAAGGTGGCAGAATCCAAGGTTCCTAAAGGTGGAGGATCAAG AGAGACGAAACCTCCTTTGTTTCATAATGGATTTGGTAAATCTGCTGCAGCTGTGGGAGGAAACGCGGACCGTCAACTTGGACTCTTTAATTTGAAACGC GCTTCTTTACCAGTATTCCAGCCAGAAAGTGAGACGCACTCTACAACATTGAAACCTGGCGCAGAGCATGAGGGAAAAGCTTACAACTCAAGTAATTGCA GAAAGAAACCAGCTTCAGAGAAGGAAACTATAGAAGTCACAATATCTGCAGAAGTTATGGATGCTGTGTATGGTAAAGATGGACGCAATCTAGATAAAAT TAGAAAGTTTGGTGTTGTCACACAGATTTCAGGGGCTAAAGTAGCAGTGGTTGATGAATCTGGCGGGAAGCGGGATGAGGTGAAGATTATGATATCGGGG ACAGCTGATGAAGCCAAAGTGGCAGAGAGTTTACTTCAAGCATCTATCCTATGTGGCGGTCACTGA
AA sequence Show only first row Show all	>Lus10012725 pacid=23148226 polypeptide=Lus10012725 locus=Lus10012725.g ID=Lus10012725.BGIv1.0 annot-version=v1.0 MNGAEHRVVVVVGSSTPEQRLLLEEDCEELVSNAQEAVLRVVERMWQGGGRGGGGGVVVWCVRGRGXXXXXXXXXXXXXXIGQGGRTITKLKKVSGAHIN ILPPPPCASPDEQLIQITGSVVSVKRAIIVVTGCLQNFLQRERDQIPMTVRPIERRSSSSKTSHDQHLQFFPHLSSMLTPSDDTCSSLSNGKEKILKDAK GGKEEVSFRLLVSESAAGCIIGRAGSVVKSLQDRTGASIRVAPSRTKSWERVVTVSALENEESRYSPAQTAALLVFGRSIENDFEKARSSGSIEGTNVSA RLLVDMVYIRCLATNGLIEAEVTEGAAFKVHRLEDNYIRDDVILEITGEYKNVTKTLTRVVSKLRENVFTSNMLEVASSSSSTGRVTDATTPTLLQSSQS VESSQRGSCESIDEQLGGGATGIIDSSDGNGMASPSQVSEIERFLRFLPRQGVKVAESKVPKGGGSRETKPPLFHNGFGKSAAAVGGNADRQLGLFNLKR ASLPVFQPESETHSTTLKPGAEHEGKAYNSSNCRKKPASEKETIEVTISAEVMDAVYGKDGRNLDKIRKFGVVTQISGAKVAVVDESGGKRDEVKIMISG TADEAKVAESLLQASILCGGH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22600			RNA-binding KH domain-containi...		Lus10012725 [exp]	0	1
AT1G28490		OSM1, ATSYP61, ...	syntaxin of plants 61 (.1.2)		Lus10018642 [exp]	3.7	0.7324
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10040268 [exp]	14.5	0.7732
AT3G01810			unknown protein		Lus10022341 [exp]	29.6	0.7474
AT5G66760		SDH1-1	succinate dehydrogenase 1-1 (....		Lus10024015 [exp]	47.3	0.7294
AT2G03060	MADS	AGL30	AGAMOUS-like 30 (.1.2)		Lus10026613 [exp]	48.7	0.7290
AT3G63460		EMB2221	transducin family protein / WD...		Lus10005322 [exp]	60.9	0.6716
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Lus10008042 [exp]	65.5	0.6798
AT2G39750			S-adenosyl-L-methionine-depend...		Lus10001013 [exp]	82.0	0.6985
AT3G11170		AtFAD7, FADD, F...	FATTY ACID DESATURASE D, fatty...		Lus10018245 [exp]	108.8	0.6728
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10001529 [exp]	137.2	0.6597

Compare expression of checked genes

Lus10012725 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.