Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22590 448 / 7e-155 UDP-Glycosyltransferase superfamily protein (.1) AT5G49690 387 / 5e-131 UDP-Glycosyltransferase superfamily protein (.1) AT5G65550 357 / 2e-119 UDP-Glycosyltransferase superfamily protein (.1) AT3G29630 215 / 1e-64 UDP-Glycosyltransferase superfamily protein (.1) AT5G53990 208 / 5e-62 UDP-Glycosyltransferase superfamily protein (.1) AT5G54060 208 / 1e-61 UF3GT UDP-glucose:flavonoid 3-o-glucosyltransferase (.1) AT1G64910 207 / 2e-61 UDP-Glycosyltransferase superfamily protein (.1) AT2G22930 207 / 2e-61 UDP-Glycosyltransferase superfamily protein (.1) AT4G09500 205 / 7e-61 UDP-Glycosyltransferase superfamily protein (.1.2) AT5G54010 201 / 2e-59 UDP-Glycosyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025711 [exp] 540 / 0 AT2G22590 473 / 2e-164 UDP-Glycosyltransferase superfamily protein (.1) Lus10035951 [exp] 518 / 0 AT2G22590 464 / 3e-161 UDP-Glycosyltransferase superfamily protein (.1) Lus10027850 [exp] 335 / 8e-111 AT5G49690 560 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10043445 [exp] 229 / 2e-69 AT5G65550 225 / 3e-68 UDP-Glycosyltransferase superfamily protein (.1) Lus10008453 [exp] 225 / 2e-68 AT5G54010 539 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10042242 [exp] 217 / 8e-67 AT5G65550 280 / 9e-92 UDP-Glycosyltransferase superfamily protein (.1) Lus10013337 [exp] 215 / 2e-64 AT5G54010 452 / 1e-156 UDP-Glycosyltransferase superfamily protein (.1) Lus10003154 [exp] 209 / 5e-62 AT5G54010 318 / 3e-104 UDP-Glycosyltransferase superfamily protein (.1) Lus10006280 [exp] 191 / 5e-55 AT5G65550 179 / 6e-51 UDP-Glycosyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G034100 [exp] 469 / 3e-163 AT2G22590 505 / 2e-177 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G030600 [exp] 462 / 3e-160 AT2G22590 537 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182575 [exp] 405 / 7e-138 AT5G49690 468 / 7e-163 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G184400 [exp] 369 / 4e-124 AT5G49690 549 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.014G088400 [exp] 354 / 1e-117 AT2G22590 374 / 4e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.002G162300 [exp] 345 / 7e-115 AT2G22590 372 / 6e-125 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G042800 [exp] 343 / 7e-114 AT5G49690 377 / 3e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.006G179700 [exp] 224 / 6e-68 AT5G54010 349 / 2e-116 UDP-Glycosyltransferase superfamily protein (.1) Potri.010G182650 [exp] 216 / 3e-67 AT5G65550 254 / 4e-82 UDP-Glycosyltransferase superfamily protein (.1) Potri.011G097900 [exp] 221 / 9e-67 AT5G54010 498 / 1e-174 UDP-Glycosyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10012726 pacid=23148181 polypeptide=Lus10012726 locus=Lus10012726.g ID=Lus10012726.BGIv1.0 annot-version=v1.0 ATGGCGGAAACCAAGCTCCACATCGCGATGTTCCCGTGGCTAGCATTCGGTCACATCCTCCCATTCCTCCAGCTCGCAAAGCTAATCGCTTCCAAAGGCC ACAAGATCTCCTTCATCTCCACCTCCAAAAACATCGACCGCCTCCCGCAAATCCGCCAACCTCTAATCACCTTCGTCAAGCTCAATCTCCCTTCCGTCGA CGGCCTACCTCCGACGGCACACTCCACCTCCGATCTACCGATCGAAGACGTCCACTACCTCAAGAAGGCCTACGACCTTCTCAAGCCCCAACTCGCCGAC TTCCTCCGCTCTTCCAATCCGGACTGGATCGTCTTCGACTACGTCCCGTTCTGGCTCCCTCCGTTGGCTCGTGAGCTAAACATTCCGACTGTTTACTTCA GCATCTTCCTCGCATCGGTGATGGCGTTCGTCGGACCACCGGTCGGTGAGGCAGAGTACCGGGAAAAAACAGAGGATTACACTGCGAGGCCGAGGTGGAT GAAATTGAATTCCACAGTCTATTACAGGCGATTCGAGGCGGAGAAGGCGTTTCCGGCGATAAGTGGCGACGGAGAATTGCGGATAGTACCTGAGTTCCAC CGCTTTCAGCAGTCGTTGAGAGGATGCGATTTGATCGCCGTCAGGAGCTGCCGGGAGATTGAGCTGGAGTATTTGGATCTGCTGGAGGAGATTCAGGGGA AGCCGGTTTTCCCGATCGGCGTGCTTCTGAGCGAGGATAATTCGGGATCGGAGGATTCAATTTCAGGGGGATCGGATTGGTTAGGGATTCGAAAGTGGCT TGACGAGCACAAAAAGGGGTCGGTTGTTTATGTAGCGTTCGGGAGCGAGGCCAAACCGAGTCAGGATGAGCTGACCGAGATTGCGACCGGTTTGGAGATT TCGGGTTTACCGTTCTTTTGGGTGCTCCGTACCCGACGGAGCCCTGATGACCCGGAAGTGCTGGAGCTGCCTGATGGGTTCGAAGTGCGGACTCAAGGGA AGGGGGTTGTGTGGAAGGGGTGGGCCCCACAGGTGAAGATTCTGACACACGACTCGGTGGGTGGGTTCCTGACTCATTCCGGGTGGAGCTCGGTGGTCGA GTCGCTTCAATTCGGGCGGCCCTTGGTGTTGCTAACTTTTTACGCGGACCAAGGGCTAAATTCGAAGTTGTTGCAGGAGAAGGGGGTGGGTTATTTGGTT CCGAGGGACGAGTTGGATGGGCGGTTCACGAGAGAGGCGGTGGCCGAGTCGGTGAGGATGGTGGTAGACGAAGAAGATGGACGGCGGCATAGAGATAAAG CCGGTGAGATGAAGGAGCTGTTTGGCCATGTGGAGAAGCATCGGAGTTATGTGGGTGATTTCTTGCGTTACCTTGAGGCCAATAAGTTGAACTAA
AA sequence Show only first row Show all	>Lus10012726 pacid=23148181 polypeptide=Lus10012726 locus=Lus10012726.g ID=Lus10012726.BGIv1.0 annot-version=v1.0 MAETKLHIAMFPWLAFGHILPFLQLAKLIASKGHKISFISTSKNIDRLPQIRQPLITFVKLNLPSVDGLPPTAHSTSDLPIEDVHYLKKAYDLLKPQLAD FLRSSNPDWIVFDYVPFWLPPLARELNIPTVYFSIFLASVMAFVGPPVGEAEYREKTEDYTARPRWMKLNSTVYYRRFEAEKAFPAISGDGELRIVPEFH RFQQSLRGCDLIAVRSCREIELEYLDLLEEIQGKPVFPIGVLLSEDNSGSEDSISGGSDWLGIRKWLDEHKKGSVVYVAFGSEAKPSQDELTEIATGLEI SGLPFFWVLRTRRSPDDPEVLELPDGFEVRTQGKGVVWKGWAPQVKILTHDSVGGFLTHSGWSSVVESLQFGRPLVLLTFYADQGLNSKLLQEKGVGYLV PRDELDGRFTREAVAESVRMVVDEEDGRRHRDKAGEMKELFGHVEKHRSYVGDFLRYLEANKLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22590			UDP-Glycosyltransferase superf...		Lus10012726 [exp]	0	1
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Lus10027885 [exp]	2.0	0.9007
AT5G24580			Heavy metal transport/detoxifi...		Lus10032923 [exp]	5.7	0.8518
AT4G34120		CBSX2, CDCP1, L...	LOSS OF THE TIMING OF ET AND J...		Lus10002834 [exp]	6.6	0.8697
AT5G06700		TBR	TRICHOME BIREFRINGENCE, Plant ...		Lus10004159 [exp]	9.9	0.8691
AT1G47410			unknown protein		Lus10006481 [exp]	13.9	0.8684
AT5G17330		GAD1, GAD	GLUTAMATE DECARBOXYLASE 1, glu...		Lus10028530 [exp]	16.6	0.8471
AT5G08200			peptidoglycan-binding LysM dom...		Lus10017399 [exp]	17.5	0.8569
AT1G01470		LSR3, LEA14	LIGHT STRESS-REGULATED 3, LATE...		Lus10036402 [exp]	22.6	0.8509
AT1G21830			unknown protein		Lus10018177 [exp]	23.2	0.8517
AT3G11700		FLA18	FASCICLIN-like arabinogalactan...		Lus10016194 [exp]	24.5	0.8524

Compare expression of checked genes

Lus10012726 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.