Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65530 456 / 2e-156 Protein kinase superfamily protein (.1) AT5G10520 449 / 3e-153 RBK1 ROP binding protein kinases 1 (.1) AT5G18910 352 / 4e-115 Protein kinase superfamily protein (.1) AT5G35960 339 / 4e-111 Protein kinase family protein (.1) AT3G05140 330 / 5e-107 RBK2 ROP binding protein kinases 2 (.1) AT2G18890 308 / 1e-99 Protein kinase superfamily protein (.1.2) AT5G57670 294 / 7e-92 Protein kinase superfamily protein (.2) AT1G21590 265 / 6e-79 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G77280 251 / 1e-73 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G16750 234 / 1e-68 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035949 [exp] 576 / 0 AT5G65530 521 / 0.0 Protein kinase superfamily protein (.1) Lus10025713 [exp] 514 / 2e-179 AT5G65530 461 / 8e-161 Protein kinase superfamily protein (.1) Lus10034000 [exp] 355 / 4e-114 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10012776 [exp] 353 / 1e-113 AT5G18910 568 / 0.0 Protein kinase superfamily protein (.1) Lus10018959 [exp] 339 / 5e-110 AT3G05140 512 / 8e-180 ROP binding protein kinases 2 (.1) Lus10008192 [exp] 330 / 2e-107 AT5G35960 489 / 4e-172 Protein kinase family protein (.1) Lus10019990 [exp] 322 / 5e-102 AT5G57670 628 / 0.0 Protein kinase superfamily protein (.2) Lus10002659 [exp] 309 / 5e-102 AT5G10520 165 / 3e-48 ROP binding protein kinases 1 (.1) Lus10006957 [exp] 306 / 2e-99 AT2G18890 459 / 1e-162 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G011700 [exp] 491 / 6e-170 AT5G10520 552 / 0.0 ROP binding protein kinases 1 (.1) Potri.013G028100 [exp] 348 / 9e-114 AT3G05140 548 / 0.0 ROP binding protein kinases 2 (.1) Potri.010G027301 [exp] 348 / 5e-113 AT5G18910 527 / 0.0 Protein kinase superfamily protein (.1) Potri.014G136300 [exp] 343 / 6e-113 AT5G35960 556 / 0.0 Protein kinase family protein (.1) Potri.006G173700 [exp] 323 / 1e-102 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2) Potri.018G096100 [exp] 321 / 5e-102 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.006G166600 [exp] 303 / 2e-97 AT2G18890 463 / 3e-163 Protein kinase superfamily protein (.1.2) Potri.018G091200 [exp] 297 / 2e-95 AT2G18890 469 / 8e-166 Protein kinase superfamily protein (.1.2) Potri.002G077900 [exp] 259 / 4e-77 AT1G77280 797 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G175100 [exp] 258 / 4e-77 AT2G16750 564 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10012727 pacid=23148203 polypeptide=Lus10012727 locus=Lus10012727.g ID=Lus10012727.BGIv1.0 annot-version=v1.0 ATGTTCGGAAACATTAAGAAGAAATCGGTGCGGAGATTCTCAGTCATCCCGTTGATGTCACCGTACGAGACCATCAACAAGATTAACGTCGTCAAGAAGA AACTGACTAACAGAGTTAATAATAAGGAGCTCGCCGGAGAAGGGGACTTCGACGGCGGCTTCCCCTTTCACAAACCCTCTTGGAAGAACTTTCGGTACAA GGAGCTCGTTGCGGCCACCGACGACTTCAACCTCGAGAATTTGATTGGGAAAGGAGGGTATGCAGAAGTGTACAAAGGGCATTTGCCAGACGGGAGAGTA GTGGCTGTGAAGAAGATAATGATGAAGACAGATAAGAAAGAAGAGGACATGACTGCCGATTTCTTATCAGAGCTCGGCATCATTGCGCACATTAACCACC CTAACGCTGCCAAACTCGTTGGCTTCAGCATCGACAGTGGCTTGCATCTTGTGCTCGAGTTCCTTCCTTATGGCAGCCTCGGCAATAAGCTCCACGACAC AGGGGAGTGTCTAGACTGGGAGAAAAGATACAGAGCAGCTGTAGGAATTGCAGAGGGTCTAAGGTACCTTCACCATGATTGCCCTAGGCGTGTTATCCAC CGTGACATCAAGGCTTCCAACATCTTGCTCGCTGAAGATTATGAAGCTCAGATTTCGGATTTTGGATTGGCAAAGTGGCTACCTGAGAATTGTGCTCAAC TCGTTATCTTCCCAATCGAGGGCACTGTTGGATACCTTGCTCCAGAGTACTTCATGGATGGAGTGGCTGATGAAAAAACTGATGTATTTGCCTTTGGAGT TCTTTTGTTGGAGATCATAACTGGCCGCCATGCAGTTGACCACTCCACCAAACAATCCCTTGCTATGTGGGCGAAACCATTGTTGGAAGCGAACGACGCG AGCACATTGGCGGACCCGAGGCTAGGGAACGACTTCAACATGTCTGAGATGAAGCGAGCGATGGTGACTGCATACTTGTGTATCGACCACGACTCGAAGA TGCGACCTTCCATGACTCGGGCCGTGCAAATACTGAACGGGGAAGACGTAGCCATTGATGCTGTGATGGTACAGAAGACAAGCTCAGGGAGGGGCGTTCT ATTGGATGCTAGCGACTTGCAAGATTACACGTTTCTAAGTGTAAGCAAGCTTTTGACTGCCATCGCATTTTGCTGCTGGAACGTATGGAAAGCAAGGAAT GCGTCCGTGTTCAATAATGCCCGACCGGTCGGGATCCACACAGCTAGCGTCTGCAGCAAGGAGTGTCTTGAGTGGGAGGCGTGCAACCATCCCTTGGCTT CTACGCCGTCCAGGCAGCTCGCTCTCCCCTTTCGAGCGACTAATCCCCCGCCAAGCAACCACCTTTGGGTGTTTCACTGTGATAGATCATTTATTCATGA TTCCCAGATGACGGATTATAGCATCATTATCTCCGATATCCATGGAAAGGTCTTTGATGGTAGAGCTGCAGTTTTCCCTTGTTCGTCTCCTTTTGCCATC GAAGCGAAAGCTGTGTGCTTGTCACGGTGGAATTGGCCGCAGGGCCCGTCTTCCATCCTCTCCAACTGTCTATCCCTGACCAGGCTCCTCAATGGTGATT CTTCCTTTCGTCACTGGGATGGTGCGGCAACTATAGCTCTTATTCTTCGGCTCTTGCGAGCTAACCACCAGATTGTGGTAGGCTTTACGCCCCGAAATAA GAATCGTAATGCTGACTGGGCTGCCCGGAACATGCTGGTGGGTACTCTTCCCCAGAATTGGGTCAACGCGTTACCCTTTAATGGGCTGTAA
AA sequence Show only first row Show all	>Lus10012727 pacid=23148203 polypeptide=Lus10012727 locus=Lus10012727.g ID=Lus10012727.BGIv1.0 annot-version=v1.0 MFGNIKKKSVRRFSVIPLMSPYETINKINVVKKKLTNRVNNKELAGEGDFDGGFPFHKPSWKNFRYKELVAATDDFNLENLIGKGGYAEVYKGHLPDGRV VAVKKIMMKTDKKEEDMTADFLSELGIIAHINHPNAAKLVGFSIDSGLHLVLEFLPYGSLGNKLHDTGECLDWEKRYRAAVGIAEGLRYLHHDCPRRVIH RDIKASNILLAEDYEAQISDFGLAKWLPENCAQLVIFPIEGTVGYLAPEYFMDGVADEKTDVFAFGVLLLEIITGRHAVDHSTKQSLAMWAKPLLEANDA STLADPRLGNDFNMSEMKRAMVTAYLCIDHDSKMRPSMTRAVQILNGEDVAIDAVMVQKTSSGRGVLLDASDLQDYTFLSVSKLLTAIAFCCWNVWKARN ASVFNNARPVGIHTASVCSKECLEWEACNHPLASTPSRQLALPFRATNPPPSNHLWVFHCDRSFIHDSQMTDYSIIISDIHGKVFDGRAAVFPCSSPFAI EAKAVCLSRWNWPQGPSSILSNCLSLTRLLNGDSSFRHWDGAATIALILRLLRANHQIVVGFTPRNKNRNADWAARNMLVGTLPQNWVNALPFNGL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65530			Protein kinase superfamily pro...		Lus10012727 [exp]	0	1
					Lus10003825 [exp]	3.5	0.9864
AT5G56990			unknown protein		Lus10029528 [exp]	4.9	0.9864
					Lus10038051 [exp]	6.0	0.9864
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10025597 [exp]	6.5	0.9387
AT5G01660			unknown protein		Lus10040599 [exp]	6.9	0.9864
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10014062 [exp]	7.7	0.9864
					Lus10015336 [exp]	7.7	0.8688
					Lus10029261 [exp]	8.5	0.9864
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10006444 [exp]	8.9	0.9454
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10029635 [exp]	9.2	0.9864

Compare expression of checked genes

Lus10012727 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.