Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22560 381 / 2e-115 Kinase interacting (KIP1-like) family protein (.1) AT5G10500 271 / 9e-77 Kinase interacting (KIP1-like) family protein (.1) AT1G58210 269 / 3e-74 EMB1674 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) AT1G09720 241 / 5e-66 Kinase interacting (KIP1-like) family protein (.1) AT3G22790 77 / 7e-14 Kinase interacting (KIP1-like) family protein (.1) AT4G14760 70 / 8e-12 kinase interacting (KIP1-like) family protein (.1) AT1G03080 68 / 4e-11 kinase interacting (KIP1-like) family protein (.1) AT4G02710 61 / 4e-09 Kinase interacting (KIP1-like) family protein (.1) AT2G30500 52 / 2e-06 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT1G03470 50 / 4e-06 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002655 [exp] 1883 / 0 AT2G22560 511 / 9e-164 Kinase interacting (KIP1-like) family protein (.1) Lus10025717 [exp] 622 / 0 AT2G22560 497 / 6e-158 Kinase interacting (KIP1-like) family protein (.1) Lus10035944 [exp] 568 / 0 AT5G10500 280 / 3e-78 Kinase interacting (KIP1-like) family protein (.1) Lus10032844 [exp] 202 / 1e-53 AT1G58210 280 / 4e-80 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Lus10001866 [exp] 199 / 1e-52 AT1G58210 281 / 1e-80 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Lus10039359 [exp] 78 / 3e-14 AT3G22790 1402 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10006896 [exp] 63 / 1e-09 AT1G03080 927 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10014687 [exp] 62 / 3e-09 AT1G03080 938 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10021908 [exp] 59 / 3e-08 AT4G14760 710 / 0.0 kinase interacting (KIP1-like) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G011300 [exp] 466 / 2e-146 AT2G22560 851 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.005G147300 [exp] 461 / 9e-145 AT2G22560 421 / 2e-131 Kinase interacting (KIP1-like) family protein (.1) Potri.002G106400 [exp] 283 / 4e-80 AT1G58210 702 / 0.0 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Potri.010G083300 [exp] 81 / 4e-15 AT3G22790 1306 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.008G156250 [exp] 75 / 2e-13 AT3G22790 519 / 7e-168 Kinase interacting (KIP1-like) family protein (.1) Potri.002G049600 [exp] 72 / 2e-12 AT1G03080 1229 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.005G213400 [exp] 72 / 3e-12 AT1G03080 1399 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.019G131000 [exp] 57 / 5e-08 AT2G30500 389 / 4e-129 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.013G158100 [exp] 55 / 3e-07 AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.003G164200 [exp] 50 / 3e-06 AT1G03080 109 / 1e-26 kinase interacting (KIP1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07765 [flax] [poplar] KIP1 KIP1-like protein
Representative CDS sequence Show only first row Show all	>Lus10012730 pacid=23148215 polypeptide=Lus10012730 locus=Lus10012730.g ID=Lus10012730.BGIv1.0 annot-version=v1.0 ATGGAAGAAAAGGTGCACTCAGTCATGGCACTGGTATCAGAGGATGGAGATTCATTTGCAAAGAGGGCAGAAATGTACTACAAGAAAAGGCCAGAAATCG TCATCTTTGTGGAGGAGGCTTACAGAGCCTACAGGGCATTAGCAGAAAGGTACGATCACATCTCCACAGAGCTTCAGAATGCCAACAACACCATTGCCTA TGTCTTTCCCGAGCAAGTTCAGTTCGCAATGGAAGAGGAAGACGATATACCTTCCCCGAGGTTCCTTAAAAAGGCTTCTGGCGATTTCCCGCCGAAAGGG AACATCCCGAAAGTCCCCAAGTTCACGAAAGAGATCAAGGGAATGTTCCAATCCGCCACCAAAAAGCTGCAGCCTAAGAAATCGATGAAAGCGTCAGCAA GTTCTGTTTCGAAATCCAGTCTGACGAAACCTGAGGCGTTCAAGGAGATAGATAAGCTTCAAAAGCAGGTTCTTGGGTTGCAGACCGAGAAAGAGTTTGT GAAAAGCTCGTATGAGAATGGGTTAGCTAAGTATTGGGAGATCGATCAGCAGATTAGGGAGATTCAGGATAAAGCTTGTACCTTGCAAGAAGAGTTTGGG GCGGAGAACGTTATTGAAGATGATGAAGCTCGATCGGTGATGACCTCTGCTGCGTTGAGATCGTGTCAGGAGACGCTGGCTAAGTTGGAGGAGAAGCAAG AGAAGTCGGTCGAGGAAGCGAAGAAAGAACAGCTAAGGATCAGAGAAGCTAAGGAGAAACTCAAGTCTCTTCAAACCTCCGATCAAAAGACCGATATTAT CGATAAAGAGAAGTTCGATCCTCTTCGTCCAACTGGCGAGGATGAGAAGGAACAAGAGGAGCTAAGATCGCTCCACCAACAGAGAGAAGAAATCGAGTTG TTGCGAGAGAAGATCAAGAAGCACTTCGAAGCAAGTGCTGATTCATCCTTCACAGTGAGCGAGATGGCCGAGAAGATCGACGAGCTTGTGAACAAGGTGG TAGGGTTAGAAGCAGCAGTTTCATCGCAGTCTGCTCTGATCCAGAGGATGAGGAACGAGACAGATGAACTCCATGGCGAGATTCGGAGCTTAGAGGAGGA GAAAGGAAAAGAAGGGGTGAGTTTGAATGACAAGTTGGAGGAAATGGAGAGGAAGCTAGAAGGAATTGAGGAGATTAATGAGGACGTTGATGATCAAAGC ATCAACCTTCAAACGAATTTCATGGAGGCGAAGTGTAACTTGGACCACCTTTATGAGAAGATGGACAGTGTAAAGCCAGACGAGGGCGAGATCCACACTC CACAGTCGGTGTTGCGTAAGAAGAAAGCACCTAAGTTTGAATCGACACAGCAACAACCGTTTGTTAAAGGGAAGAATATAAGAAATGCAGTGGCTGAGTT TGACAACTCAATCAAACAAGACAAAGCCAAAAGTGAGAAAGAGTTGAAACAACAACAGGTAGCTGATGAGATTAGGGCAGCGAGGGAGGCTAGGAAGAAG GTGAAGAAACCAAAGAAGGAAAAGAAGGTAAAACAAATAGTAGTAACAGAAAAGCAGGAAGCAAATGTGAGAACAGAAGAGCAGGGAGACGTTAATGCAA CTGAAGGAAGAAGTGATGCAGATGTGAGTGAAGTAGAGGAAACTAGACCACCAAAGGAACAACAAGAAGAAGAAGAGAAGAAAGAAAGAGATGATTCGGA GAAAGGGACTCAATCAGATATTAGACATGATGACGGTGAACCTAAAGAAAATTATGCAGTAGCAAAACAGAAGTCTTTAAAGAAACTCGATCGCCTCGAT GCTACTGAAACAAGTGAGAAAGTGGAAGAAAAGGCTACATCATTAACAACAATGCCTAATGACAGTGTTCATCAACAAGGGGAAGAAAGAAAGGAACAAG GAGAAGACTCGCCGAATCATTCAGTTGAAGCAGACAGCAAAAGTAAACAAGAAATGAGCAACTTGTTGGGGAATGATTTAGACAAAGGAAAGGACTCTTT AGAGGATCCCAGTGAAGATAAGACTGTTACAAAGCAAAAATCTTTGAAGAAACTAGAAAAGCTTACTGTCGAGGATCAAGAACGAGTGGCAGCTGCTGCT GCTGCGGTTGATGTTACTGCTGAATCACATGCAAGTTCATCCGGGGATGCTGCAGCTGAAGAAAAAGGAGAAGTAGGTGATCCTAGTGTTAAAACACAAG ACGAAAACAGAGTAATATTATCAGCACCAGCTGCTGCAGCTGATGATAGTGTTAAAACGGAAGACGACAATGCAGCATCCAAGACTGGAAATGAAGATGA TGCAGCTGGTGATAATATTAAAAGGGAAGACAATAATGCGGCATCCAAGACTGCAAATGAAGATGATGAGCCAGACTGGAAAGAGTTGTTCTTGAAAGGT GTGGAAAATCGAGAACGAGTTCTTCTTGCAGAATACACGACCATCCTACGAAACTTCAAAGAAGTGAAGAAGAAGCTCAGTGAATCAGAAGCCAAAGGAG GGGATAGTATGTTTGATATAACCGTTCAGCTAAGAGAATTGAGGGCAGCTAATGCTAGAAAGGATGAACAGATTCGAATGTTAAGAAAAAGACTGCGTAA AATGCAAGAAGCAGGAGACGACGATGAGAACACAGATTCACCATTTTCGGAGGCTGATATATTAGCAGACATGAATCTGGATCTGGGAGATGGTATTTCC CCCATTGAAGAGAGGTTCCGATCAAGCATTGACGAAGTTTTGGAGGATAACTTGGACTTCTGGCTCAGATTCAGCACCACATTCCAGCAGGTACAACAAT TTGAAACAGAAGTCAGTGACTTGCAATCCGAGTTGACTGAACTCGAGGAAAAGCTGGGCAAGCAAGACGGAAGTAGCCGCGGGAAGTACAGTCTGAAATC AGATGCAAGGCCATTGTATAAGCACCTAAGGGAGATCCACACGGAACTAATAGTCTGGATTGATAAAGGTATGCTCTTGAAAGATGAACTTAAAGGAAGA TTCTCGGCATTGTGTGAAATTCAAGACGAGATTACATCCGCTCTCAAGGAGAGCGCCGAAGATGAAGATTTCACCTTCACAAGCTACCAGGCTGCGAAAT TTCAGGGCGAAATTCTCAACATGAAGCAAGAGAATACCAGGGTTGGAGATGAGTTGCAGGCTGGACTTGATCATGTAACCAACCTGCAACTTGAGGTGGA CAAGACGTTACACAGATTAAATGACAAGTTCAAACTTTCTGGATCAAAGAATCGTCAAACTATCCAGCTTCAACACACAGAGAGCCGATCTCGAGTTCCA TTGAGATCATTCATTTTCGGAGTCAAACAGAAAAAGCAAAGACATTCCATCTTCTCTGTTGTCAATCCAGTACTCCACAGGAAGTACAATGGCTTAAAAT CAGGACTTAATCTATAG
AA sequence Show only first row Show all	>Lus10012730 pacid=23148215 polypeptide=Lus10012730 locus=Lus10012730.g ID=Lus10012730.BGIv1.0 annot-version=v1.0 MEEKVHSVMALVSEDGDSFAKRAEMYYKKRPEIVIFVEEAYRAYRALAERYDHISTELQNANNTIAYVFPEQVQFAMEEEDDIPSPRFLKKASGDFPPKG NIPKVPKFTKEIKGMFQSATKKLQPKKSMKASASSVSKSSLTKPEAFKEIDKLQKQVLGLQTEKEFVKSSYENGLAKYWEIDQQIREIQDKACTLQEEFG AENVIEDDEARSVMTSAALRSCQETLAKLEEKQEKSVEEAKKEQLRIREAKEKLKSLQTSDQKTDIIDKEKFDPLRPTGEDEKEQEELRSLHQQREEIEL LREKIKKHFEASADSSFTVSEMAEKIDELVNKVVGLEAAVSSQSALIQRMRNETDELHGEIRSLEEEKGKEGVSLNDKLEEMERKLEGIEEINEDVDDQS INLQTNFMEAKCNLDHLYEKMDSVKPDEGEIHTPQSVLRKKKAPKFESTQQQPFVKGKNIRNAVAEFDNSIKQDKAKSEKELKQQQVADEIRAAREARKK VKKPKKEKKVKQIVVTEKQEANVRTEEQGDVNATEGRSDADVSEVEETRPPKEQQEEEEKKERDDSEKGTQSDIRHDDGEPKENYAVAKQKSLKKLDRLD ATETSEKVEEKATSLTTMPNDSVHQQGEERKEQGEDSPNHSVEADSKSKQEMSNLLGNDLDKGKDSLEDPSEDKTVTKQKSLKKLEKLTVEDQERVAAAA AAVDVTAESHASSSGDAAAEEKGEVGDPSVKTQDENRVILSAPAAAADDSVKTEDDNAASKTGNEDDAAGDNIKREDNNAASKTANEDDEPDWKELFLKG VENRERVLLAEYTTILRNFKEVKKKLSESEAKGGDSMFDITVQLRELRAANARKDEQIRMLRKRLRKMQEAGDDDENTDSPFSEADILADMNLDLGDGIS PIEERFRSSIDEVLEDNLDFWLRFSTTFQQVQQFETEVSDLQSELTELEEKLGKQDGSSRGKYSLKSDARPLYKHLREIHTELIVWIDKGMLLKDELKGR FSALCEIQDEITSALKESAEDEDFTFTSYQAAKFQGEILNMKQENTRVGDELQAGLDHVTNLQLEVDKTLHRLNDKFKLSGSKNRQTIQLQHTESRSRVP LRSFIFGVKQKKQRHSIFSVVNPVLHRKYNGLKSGLNL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22560			Kinase interacting (KIP1-like)...		Lus10012730 [exp]	0	1
AT4G19380			Long-chain fatty alcohol dehyd...		Lus10037257 [exp]	1.4	0.8686
					Lus10029449 [exp]	1.7	0.8819
AT4G13450			Adenine nucleotide alpha hydro...		Lus10014459 [exp]	7.2	0.8315
AT5G26250			Major facilitator superfamily ...		Lus10041212 [exp]	8.5	0.8498
AT2G34930			disease resistance family prot...		Lus10029483 [exp]	10.5	0.8045
					Lus10005948 [exp]	13.0	0.7795
AT5G39670			Calcium-binding EF-hand family...		Lus10007536 [exp]	15.0	0.8263
					Lus10026969 [exp]	17.6	0.7656
					Lus10022721 [exp]	19.0	0.8121
AT1G59710			Protein of unknown function (D...		Lus10030804 [exp]	19.1	0.8194

Compare expression of checked genes

Lus10012730 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.