Plant FIBer expression Database

Lus10012731 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G65490 646 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002654
[exp]
1074 / 0 AT5G65490 715 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G134400
[exp]
760 / 0 AT5G65490 765 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07093 SGT1 SGT1 protein
Representative CDS sequence
>Lus10012731 pacid=23148213 polypeptide=Lus10012731 locus=Lus10012731.g ID=Lus10012731.BGIv1.0 annot-version=v1.0
ATGGCCGCCGCACCGCCGCCGTCGAGAGCCGGCGATCCTTTTTCGTCAGTCTTCTCCTCTTCCTCCCGCCTCGCGGAGGATACCGTTTTCTTCGCAATAT
ATCCAGACTGCTTCGTGTCGGATTCTCCTCCACCGTCTCCTTCCCACTACCTCCAGTCTCTCCACCTCCAACTACTCCAGTTTCTCTCCTCCCATACTTT
ATCCTACATCTGGCAGCACGAGCCGCTCTCTCTGTCGATCGTCCTTCCTCCGTCGCCGTCCAACAAATTTGCTATTCCTCACCTCCATGGAAAGCTCCGG
TTCGGGGACAACATCGAGGATGAATGGTTCACGGTGTTTCTCCTCTACGAGATTTCCCGAAGCTTCCCTGAGCTTTCGATTCGAGCCTGGGACAACGACG
GCGAGTTCCTACTCATCGAAGCCGCTTTCCACCTTCCTCGATGGATAGACCCGGAGACGAGCGAGAATCGTGTGTTTATTCGCCGTGGCGATCTCCGGAT
TGTCCCCAGGAATCGGCTGCCTAACCCTAGTCTATCCGATTCTTTGAAGTTTCTGATGAATTTTGAGAGCGAGTCCAGAGCCTCCCAGCCTATTCAGAAG
GCGGTGAAGAGTCGGATTTCGGAATATCCGGATAGAGCTAGACGAAACACGCACCAGGTTAGGGTTAGGGTTCCGGTGTCGGTTGCGCAGGTGCTGAAGG
AGGAGCCATGTTTGATTTCTTTGGCGGTGGAAGCGTTCTACGACAGGGATATTGACACGATGAAGTATGCGGCGAAGATGGATAAGTTTTTGAGCAAAGG
GAGGGAGGATGAGCTTGTTTGCGTGGCGGTTAAGATGTCTAGAGCCATGTACGCCCAGTTAATGCAGCAAAAATTTCAGGCGCCCAAGTTCTATCCAATG
CCGAATCGAAGTGAGGACTCGACGGCATATATGGAGGCAGAGTTGGGTATGAAGATTGCTTGTGGATTTGAGATGATGTATCAGCATAGGAAGAAAGAAG
GAGATGAAGTGAAAGGGAGTACCTGGGAGAAGTATGTGGAGAGCTTGGAAAACAGCGGTTACTTCCATGGTTTGTTACCTGGTTCTGTGGAGTACAAGAG
GTTAATGGAGAATGCGGAGGAGTATTACAAGAAGAGCTCGTTAGCTCTGAGAACTAGTGAAATGATTAGTGCTCCAGTGAGGCGGATTGATGATATCCTT
GCTATGCCTCAGTCAGCTGACAATTTTAAGCAAGACGGCGTTCCTTCTTCAGATGATGATTCTTGGTTGTACGGTGGTGAAGTTGAGCTTGAAGAGAGAC
AAAAGGAGCTTGATCAATACAATGCAAAACATAAACAGAAGTCTAAGGAGACTGAGGGCAGCGATCCTTCGCCCAGCAATAATGTTGATGACTTCGATCT
TCGAGACATGGCTAAAAGCATGCAGGCATTCGTGGAAAAGGTGTCGAGTTTCGAGGGAGCTGAAATTCCTGAGAAAAGAGATTCAGAAGACGTGGATCTC
GATGTCAATCGCTTTCTAAAAGACATGGAATCAGTGATGAGGCGCTATGATCCTGAATCCAAAGTTGGTGAGACTGAATCTGAAGAAGGTTCATCATCTG
ACATGGAATTTGATGAGTCTGACGACGAAGATGATATCATGTTACCTGATGGGGATAATGAGTATGGTATAGACGCCTTTGCGAGTTCCTACTCTACTGC
TCTGAATAAGGAGCTCAAGGACACCGCTGTTGGCAAAACGTTTGTCAATGCCACTGGACAAACCTCCAAACAAAACGAGGGGACGTCAAATGCAGCGAAC
GACGACATGGACGATGAGTTTAATCCTATAGATGTGGATTTCAACCTGGTTAAGAACCTACTAGATTCGTTTGCTTCGCAACAAGGACAGCCGGGTCCTG
CTTCCAATTTGCTAGGACTCATGGGCGTACATCTTCCTGATGATTCCAACAAGGGGAAATGA
AA sequence
>Lus10012731 pacid=23148213 polypeptide=Lus10012731 locus=Lus10012731.g ID=Lus10012731.BGIv1.0 annot-version=v1.0
MAAAPPPSRAGDPFSSVFSSSSRLAEDTVFFAIYPDCFVSDSPPPSPSHYLQSLHLQLLQFLSSHTLSYIWQHEPLSLSIVLPPSPSNKFAIPHLHGKLR
FGDNIEDEWFTVFLLYEISRSFPELSIRAWDNDGEFLLIEAAFHLPRWIDPETSENRVFIRRGDLRIVPRNRLPNPSLSDSLKFLMNFESESRASQPIQK
AVKSRISEYPDRARRNTHQVRVRVPVSVAQVLKEEPCLISLAVEAFYDRDIDTMKYAAKMDKFLSKGREDELVCVAVKMSRAMYAQLMQQKFQAPKFYPM
PNRSEDSTAYMEAELGMKIACGFEMMYQHRKKEGDEVKGSTWEKYVESLENSGYFHGLLPGSVEYKRLMENAEEYYKKSSLALRTSEMISAPVRRIDDIL
AMPQSADNFKQDGVPSSDDDSWLYGGEVELEERQKELDQYNAKHKQKSKETEGSDPSPSNNVDDFDLRDMAKSMQAFVEKVSSFEGAEIPEKRDSEDVDL
DVNRFLKDMESVMRRYDPESKVGETESEEGSSSDMEFDESDDEDDIMLPDGDNEYGIDAFASSYSTALNKELKDTAVGKTFVNATGQTSKQNEGTSNAAN
DDMDDEFNPIDVDFNLVKNLLDSFASQQGQPGPASNLLGLMGVHLPDDSNKGK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G65490 unknown protein Lus10012731
[exp]
0 1
AT3G48610 NPC6 non-specific phospholipase C6 ... Lus10025726
[exp]
4.5 0.8357
AT5G46090 Protein of unknown function (D... Lus10017689
[exp]
12.7 0.6749
AT5G15450 AtCLPB3, APG6, ... CASEIN LYTIC PROTEINASE B-P, A... Lus10013191
[exp]
14.1 0.7877
AT1G12380 unknown protein Lus10032194
[exp]
16.2 0.7632
AT2G38970 Zinc finger (C3HC4-type RING f... Lus10040413
[exp]
19.9 0.7303
AT4G11350 Protein of unknown function (D... Lus10036382
[exp]
20.6 0.7830
AT1G32330 HSF ATHSFA1D heat shock transcription facto... Lus10011065
[exp]
23.5 0.7396
AT2G18760 CHR8 chromatin remodeling 8 (.1) Lus10003543
[exp]
25.6 0.7274
AT5G24240 Phosphatidylinositol 3- and 4-... Lus10018104
[exp]
26.2 0.7657
AT4G02720 unknown protein Lus10022052
[exp]
26.8 0.7733

Lus10012731 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.