Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65470 760 / 0 O-fucosyltransferase family protein (.1) AT4G24530 719 / 0 O-fucosyltransferase family protein (.1) AT3G26370 324 / 8e-105 O-fucosyltransferase family protein (.1) AT1G35510 316 / 1e-101 O-fucosyltransferase family protein (.1) AT1G38065 293 / 1e-93 O-fucosyltransferase family protein (.1) AT2G01480 293 / 1e-92 O-fucosyltransferase family protein (.1) AT1G38131 292 / 4e-92 O-fucosyltransferase family protein (.1) AT4G38390 284 / 2e-89 RHS17 root hair specific 17 (.1) AT1G62330 284 / 3e-88 O-fucosyltransferase family protein (.1) AT1G29200 279 / 4e-88 O-fucosyltransferase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002653 [exp] 977 / 0 AT5G65470 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10009276 [exp] 694 / 0 AT4G24530 801 / 0.0 O-fucosyltransferase family protein (.1) Lus10015890 [exp] 669 / 0 AT4G24530 778 / 0.0 O-fucosyltransferase family protein (.1) Lus10009450 [exp] 314 / 3e-100 AT1G35510 816 / 0.0 O-fucosyltransferase family protein (.1) Lus10028080 [exp] 309 / 3e-100 AT1G38065 636 / 0.0 O-fucosyltransferase family protein (.1) Lus10025631 [exp] 309 / 7e-100 AT1G38065 635 / 0.0 O-fucosyltransferase family protein (.1) Lus10036875 [exp] 321 / 5e-98 AT3G26370 935 / 0.0 O-fucosyltransferase family protein (.1) Lus10029239 [exp] 301 / 3e-95 AT1G29200 698 / 0.0 O-fucosyltransferase family protein (.1.2.3) Lus10007290 [exp] 299 / 3e-94 AT1G29200 699 / 0.0 O-fucosyltransferase family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G011000 [exp] 819 / 0 AT5G65470 784 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G105800 [exp] 707 / 0 AT4G24530 807 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G185200 [exp] 318 / 2e-102 AT3G26370 905 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G048500 [exp] 309 / 4e-99 AT3G26370 893 / 0.0 O-fucosyltransferase family protein (.1) Potri.019G080900 [exp] 310 / 5e-99 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1) Potri.011G068300 [exp] 307 / 2e-97 AT1G29200 737 / 0.0 O-fucosyltransferase family protein (.1.2.3) Potri.010G111500 [exp] 298 / 1e-94 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G087300 [exp] 299 / 2e-94 AT1G38131 704 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G130600 [exp] 292 / 4e-92 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G173500 [exp] 292 / 5e-92 AT1G38131 697 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF10250 [flax] [poplar] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Lus10012732 pacid=23148186 polypeptide=Lus10012732 locus=Lus10012732.g ID=Lus10012732.BGIv1.0 annot-version=v1.0 ATGAAGTTTGGTGGAAGAGGGGAATCTCTGCTGCTATCTTCATTCCTTCTTTCTCTTTGGTTCTTCTTCTTCTTCTTCTTCTTCTTTTTCAGCAGCACAC TATCCTATGCCTTGCCGGAGCTGAGTGTTCCAAAACCTAGGCATGTATCTCTACTGAAGAGTGCGGTGGAGCGCGAATTTTTGAATGAAGAACACTCAGA CCTGTGGACTCCTTTGACTGATCAAGGATGGCAACCATGCATAAGATCTACAGACAGCCCTTCAATACCGGAGACATCAGAGGGTTATCTTCAGGTGTTT CTTGATGGAGGGTTGAACCAGCAACGTATGGGGATATGTGATGCTGTTGCAGTTGCTAAAATGTTGAATGCAACTCTTGTCATCCCACATTTCGAGGTCA ATCCTGTCTGGAAAGATTCAAGCTCGTTCATGGATATATTTGATGTCGATCATTTCATTAATGTCTTGAAGGACGACATTTCCGTGGTTAGAGAATTGCC CGATGAATACTTCTGGAGCACGCGAGAGTATTACGCTGCAGCCATTCGTGATACCAGGATTAAGACCGCACCTGTCCATGCTTCAGCTAATTGGTATCTC GAAAATGTCTTGCCTGTGCTCCAGAGTTATGGTATTGCTGCTGTTGCTCCATTCTCCCATCGGTTGACTTTTGATAACTTGCCTGACGAGATTCAACAAC TACGCTGTAAGGTCAACTTCCAGGCATTAGTGTTCGTCCCCCACATAAGAGCACTCGGGGATGCTCTCGTCAGTCGTCTCCGGTATCCGTTTATACAAAG CGGAGAAGTTCCTCCCGATTATCTACGACAAACCTCAGACGTTATCGTTAAACCAAAGCCGAGCAAGTTTGTCGTCCTGCACCTTCGCTTCGACAAGGAC ATGGCTGCTCATTCAGGTTGTTACTTTGGCGGAGGTAAAGCCGAAAAGCTGGCTCTAGCGAAGTACCGACAAGCGATCTGGCAAGGAAGGGTTCTCAACT CTCAGTTCACCGACGAAGAGCTGAGGAATCAAGGACGATGTCCGTTGACTCCGGAGGAGATCGGATTAGTGCTTGCGGCTTTGGGATTCGACAATACGAC TCGCCTATATCTTGCTTCCCACAAGGTTTACGGTGGGGAAGCTAGAATATCAACATTGCGAACATTGTTCCCGCTAATGGAAAGCAAGAAGAGCCTTGCT TCGTCGGAGGAACGAGCACGGATCAAACTCAAAGCTTCGCTGTTAGCTGCAGTTGACTATTACGTCGGCTTACAGAGCGACATTTTCATCTCGGCTTCTC CAGGAAACATGCACAATGCTTTGGTGGGGCACCGTACGTACAAGAACATGAAGACGATAAGGCCGAGGATGGCATTACTGGGGCAACTGTTCTTGAATAA GAACATAAGCTGGGGAGACTTCAGACAAGCAGTGGTTGAAGGACATGGAAGCAGACAAGGGCAGATGAGGCTAAGAAAAGCCAAGCAGTCAATATACACA TATCCAGCTCCTGATTGTATGTGCCATGTTTGA
AA sequence Show only first row Show all	>Lus10012732 pacid=23148186 polypeptide=Lus10012732 locus=Lus10012732.g ID=Lus10012732.BGIv1.0 annot-version=v1.0 MKFGGRGESLLLSSFLLSLWFFFFFFFFFFSSTLSYALPELSVPKPRHVSLLKSAVEREFLNEEHSDLWTPLTDQGWQPCIRSTDSPSIPETSEGYLQVF LDGGLNQQRMGICDAVAVAKMLNATLVIPHFEVNPVWKDSSSFMDIFDVDHFINVLKDDISVVRELPDEYFWSTREYYAAAIRDTRIKTAPVHASANWYL ENVLPVLQSYGIAAVAPFSHRLTFDNLPDEIQQLRCKVNFQALVFVPHIRALGDALVSRLRYPFIQSGEVPPDYLRQTSDVIVKPKPSKFVVLHLRFDKD MAAHSGCYFGGGKAEKLALAKYRQAIWQGRVLNSQFTDEELRNQGRCPLTPEEIGLVLAALGFDNTTRLYLASHKVYGGEARISTLRTLFPLMESKKSLA SSEERARIKLKASLLAAVDYYVGLQSDIFISASPGNMHNALVGHRTYKNMKTIRPRMALLGQLFLNKNISWGDFRQAVVEGHGSRQGQMRLRKAKQSIYT YPAPDCMCHV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65470			O-fucosyltransferase family pr...		Lus10012732 [exp]	0	1
AT5G65470			O-fucosyltransferase family pr...		Lus10002653 [exp]	1.0	0.9011
AT4G31340			myosin heavy chain-related (.1...		Lus10026967 [exp]	2.0	0.7658
AT2G19770		PRF5	profilin 5 (.1)		Lus10006846 [exp]	2.4	0.8083
AT4G19410			Pectinacetylesterase family pr...		Lus10034762 [exp]	9.5	0.7333
AT5G08580			Calcium-binding EF hand family...		Lus10010165 [exp]	12.6	0.7235
AT2G19770		PRF5	profilin 5 (.1)		Lus10037591 [exp]	15.9	0.8005
AT5G37790			Protein kinase superfamily pro...		Lus10017631 [exp]	25.1	0.7335
AT3G50470		MLA10, HR3	INTRACELLULAR MILDEW A 10, hom...		Lus10000836 [exp]	26.4	0.6638
AT1G31850			S-adenosyl-L-methionine-depend...		Lus10034729 [exp]	27.3	0.7090
AT4G34260		AXY8, FUC95A	ALTERED XYLOGLUCAN 8, 1,2-alph...		Lus10026595 [exp]	29.6	0.7271

Compare expression of checked genes

Lus10012732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.