Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10490 561 / 0 MSL2 MSCS-like 2 (.1.2.3) AT1G58200 517 / 6e-176 MSL3 MSCS-like 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002652 [exp] 1036 / 0 AT5G10490 780 / 0.0 MSCS-like 2 (.1.2.3) Lus10009277 [exp] 523 / 2e-178 AT1G58200 710 / 0.0 MSCS-like 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G011100 [exp] 610 / 0 AT5G10490 714 / 0.0 MSCS-like 2 (.1.2.3) Potri.002G105900 [exp] 563 / 0 AT1G58200 729 / 0.0 MSCS-like 3 (.1.2) Potri.005G154000 [exp] 555 / 0 AT1G58200 734 / 0.0 MSCS-like 3 (.1.2) Potri.005G107200 [exp] 57 / 4e-10 AT5G10490 77 / 2e-18 MSCS-like 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00924 [flax] [poplar] MS_channel Mechanosensitive ion channel
Representative CDS sequence Show only first row Show all	>Lus10012733 pacid=23148205 polypeptide=Lus10012733 locus=Lus10012733.g ID=Lus10012733.BGIv1.0 annot-version=v1.0 ATGCCTGGTGCTGGTTCCTTGCTGTTGTCTCATGATTTGGGACTTTGCAAGAGCCAGAGCCGTAGGCAATTTAAGGTAATATTTCCAATTCAGCCAGGAA GGTTTTCACTATTATATCCAATTCAACAAGTAGTGCTCAGTTTCGGACCTGAAACTAACTATGACAGGTTTTTCCAGGATACTCTAGGAAGGAGCAATCT ACCTTCTTCAACTCCTGGACTGTCTTCATGCGTTTTGATAGTTGAACAGGAGAACAGTCTTGTATTCTTTTATGTACTTTTGTACGAGCATTTGAAGCTT AGGATTTTTCTTGCTGGTATTTCGCAATGTGCAATGCTGCATGGACGGGACTCTTGGATTCTCCCTATCTTGGGAACTTCTTACAAGTCCACATACAATG TACCACATATCAGTAATACTTTCCGATGCCGTTCTTTTTTGGGACCAGGTCAAGCCCTTGAAGTTCCTGCCATAAAGGCCGCTTCAGGAGCTTTAACGAG GGCATATAACAATCTACAAGCCAGTCCTCTTGTACTCAGGATAGCTCCAGCTGTAGGTATTATTGTGTTCACTGTATGGGGTCTTGCACCACTTATGCGT CAGATCCGAAACCTTATACTCTGTAAAAATGATAATGGTTGGAAAAAGAGTAACACTTACCATGTTACAACCTCCTACCTTCGGCCTTTACTGCTGTGGG CAGGTGCAATATTTATATGCAGGGCACTGGATCCTGTTGTTCTTCCGACAGAAGCTAGTCAGATTGTCAAGCAGAGGCTTCTAAATTTCGTACAGTCATT GTCAACTGTCCTGGCGTTTGCGTATAGCTTGTCACGCCTGATTCAACACTCGCAGAGATTCTTTATGGAGTCCAATGAAATCAACGATCCACGAAATATG GGGTTAGACTTTGTTGGGAAGGCTGTATACTCCTCAGTATGGGTAGCTGCTTTTTCACTCTTCATGGAATTGTTGGGTTTCTCTACCCATAAATGGCTTA CTGCTGGAGGTCTCGGGACGGTATTGCTGACTCTTGCTGGACGTGAGATATTCACGAATTTTCTCTCAAGTGCAATGATTCATGCTACTCGGCCTTTTGT TGTAAATGAGTGGATTCAGACGAAAATTGAAGGCTATGAGGTTTCTGGCACTGTAGAGCATGTGGGTTGGTGGTCGCCTACAGTCATAAGAGGTGAAGAT CGTGAAGCAGTTCATATACCGAACCATAAGTTTACGATGAATGTTGTGAGAAATCTCACTCAGAAGAGTCATTGGAGAATTAAAACACATCTGGCAATTA GTCACTTGGATGTCAATAAAATCAATACAATTGTTGCTGATATGCGCAAAGTGTTAGCTAAGAATCCTCAAGTTGAACAGCAAAGATTGCACAGAAGAGT CTTTTTAGAGAATGTCAATCCTGAAAATCAAGCTCTCATGATCTTAATATCATGCTTCGTGAAGACCTCACATATTCAAGAATATCTTTGTGTTAAGACC AATAGTATGCCGCTCCGGCCTTCAGTTGATGCTCAATCAGCGGGGAGTCCAAAGTCCGAATCCAAAATAAAGGAAGCAGCCAATGTAACAAAAGCAGGTC CAAAGATCAGTGAATCTCCAAGTTCTGATCCCACGGAGACCAAAAAGGCTGCAGTAGCCGAACGACAAAGTTCTAACATCAAAGCCACTGGCTCGGTCTC CGATGGCAAGCCTGAGGAGCCTTCACCTTCGTCGTCACCAGAAAATAGCGGTGTGAAAGCCGGTGGGCGACAAGAATCCCAATCGAAACAGGTAGGTGAA AGAAAACCAGTCTCTTCTCAACCTTCACCTTCAAGACCTGCATTGGAGGAAAACATAGTTCTTGGCGTCGCCTTAGAGGGCTCAAAGAGAACCTTGCCTA TTGAAGAAGACTCGGTTTCACCTCCGGGGGCTGGAGAGGTCAAGGAAATGGCTGCTGCCCACCGAGATGGATCGGATAATAAGAAGAAAGAGGATTCGAT TTCAACTAACGCGCCTGCAACTTCAGGTGATCAGTAG
AA sequence Show only first row Show all	>Lus10012733 pacid=23148205 polypeptide=Lus10012733 locus=Lus10012733.g ID=Lus10012733.BGIv1.0 annot-version=v1.0 MPGAGSLLLSHDLGLCKSQSRRQFKVIFPIQPGRFSLLYPIQQVVLSFGPETNYDRFFQDTLGRSNLPSSTPGLSSCVLIVEQENSLVFFYVLLYEHLKL RIFLAGISQCAMLHGRDSWILPILGTSYKSTYNVPHISNTFRCRSFLGPGQALEVPAIKAASGALTRAYNNLQASPLVLRIAPAVGIIVFTVWGLAPLMR QIRNLILCKNDNGWKKSNTYHVTTSYLRPLLLWAGAIFICRALDPVVLPTEASQIVKQRLLNFVQSLSTVLAFAYSLSRLIQHSQRFFMESNEINDPRNM GLDFVGKAVYSSVWVAAFSLFMELLGFSTHKWLTAGGLGTVLLTLAGREIFTNFLSSAMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTVIRGED REAVHIPNHKFTMNVVRNLTQKSHWRIKTHLAISHLDVNKINTIVADMRKVLAKNPQVEQQRLHRRVFLENVNPENQALMILISCFVKTSHIQEYLCVKT NSMPLRPSVDAQSAGSPKSESKIKEAANVTKAGPKISESPSSDPTETKKAAVAERQSSNIKATGSVSDGKPEEPSPSSSPENSGVKAGGRQESQSKQVGE RKPVSSQPSPSRPALEENIVLGVALEGSKRTLPIEEDSVSPPGAGEVKEMAAAHRDGSDNKKKEDSISTNAPATSGDQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G58200		MSL3	MSCS-like 3 (.1.2)		Lus10012733 [exp]	0	1
AT1G11060			WAPL (Wings apart-like protein...		Lus10018478 [exp]	2.0	0.8850
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Lus10003405 [exp]	3.3	0.9040
AT5G42940			RING/U-box superfamily protein...		Lus10018725 [exp]	5.0	0.8687
AT1G50200		ACD, ALATS	Alanyl-tRNA synthetase (.1.2)		Lus10010210 [exp]	6.5	0.8267
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10043037 [exp]	7.9	0.8759
AT4G36630		EMB2754	EMBRYO DEFECTIVE 2754, Vacuola...		Lus10014310 [exp]	9.8	0.8570
AT5G56290		EMB2790, PEX5, ...	EMBRYO DEFECTIVE 2790, ARABIDO...		Lus10027124 [exp]	11.5	0.8715
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10011134 [exp]	14.7	0.8663
AT1G06410		ATTPSA, ATTPS7	TREHALOSE -6-PHOSPHATASE SYNTH...		Lus10029258 [exp]	19.0	0.8195
AT2G47900	TUB	AtTLP3	tubby like protein 3 (.1.2.3)		Lus10033977 [exp]	19.2	0.8073

Compare expression of checked genes

Lus10012733 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.