Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24310 141 / 6e-42 Protein of unknown function (DUF679) (.1) AT3G02430 137 / 3e-40 Protein of unknown function (DUF679) (.1) AT4G18425 105 / 7e-28 Protein of unknown function (DUF679) (.1) AT5G46090 104 / 2e-27 Protein of unknown function (DUF679) (.1) AT4G28485 75 / 9e-17 AtDMP7 Arabidopsis thaliana DUF679 domain membrane protein 7, DUF679 domain membrane protein 7 (.1) AT3G21520 68 / 7e-14 AtDMP1 Arabidopsis thaliana DUF679 domain membrane protein 1, DUF679 domain membrane protein 1 (.1) AT3G21550 65 / 5e-13 AtDMP2 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) AT1G09157 66 / 1e-12 Protein of unknown function (DUF679) (.1) AT5G39650 63 / 1e-11 DAU2 DUO1-activated unknown 2, Protein of unknown function (DUF679) (.1) AT5G27370 47 / 1e-06 Protein of unknown function (DUF679) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036581 [exp] 181 / 2e-57 AT3G02430 255 / 1e-86 Protein of unknown function (DUF679) (.1) Lus10013969 [exp] 127 / 3e-36 AT4G18425 274 / 5e-94 Protein of unknown function (DUF679) (.1) Lus10015394 [exp] 127 / 4e-36 AT4G18425 273 / 1e-93 Protein of unknown function (DUF679) (.1) Lus10013975 [exp] 115 / 2e-31 AT4G18425 257 / 3e-87 Protein of unknown function (DUF679) (.1) Lus10015396 [exp] 114 / 4e-31 AT5G46090 239 / 3e-80 Protein of unknown function (DUF679) (.1) Lus10013971 [exp] 112 / 3e-30 AT5G46090 234 / 2e-78 Protein of unknown function (DUF679) (.1) Lus10017689 [exp] 108 / 6e-29 AT5G46090 197 / 8e-64 Protein of unknown function (DUF679) (.1) Lus10013974 [exp] 108 / 8e-29 AT4G18425 238 / 1e-79 Protein of unknown function (DUF679) (.1) Lus10033645 [exp] 106 / 5e-28 AT5G46090 208 / 2e-68 Protein of unknown function (DUF679) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G008600 [exp] 159 / 1e-48 AT3G02430 185 / 6e-59 Protein of unknown function (DUF679) (.1) Potri.004G223500 [exp] 152 / 6e-46 AT3G02430 195 / 1e-62 Protein of unknown function (DUF679) (.1) Potri.011G058000 [exp] 117 / 1e-32 AT4G18425 247 / 8e-84 Protein of unknown function (DUF679) (.1) Potri.004G049000 [exp] 114 / 5e-31 AT4G18425 276 / 6e-95 Protein of unknown function (DUF679) (.1) Potri.017G016300 [exp] 108 / 4e-29 AT4G18425 203 / 2e-66 Protein of unknown function (DUF679) (.1) Potri.013G027200 [exp] 78 / 2e-17 AT5G27370 153 / 5e-47 Protein of unknown function (DUF679) (.1) Potri.010G027600 [exp] 75 / 1e-16 AT3G21550 202 / 1e-66 Arabidopsis thaliana DUF679 domain membrane protein 2, DUF679 domain membrane protein 2 (.1) Potri.008G087000 [exp] 74 / 7e-16 AT1G09157 254 / 1e-85 Protein of unknown function (DUF679) (.1) Potri.010G168400 [exp] 70 / 2e-14 AT1G09157 223 / 2e-73 Protein of unknown function (DUF679) (.1) Potri.013G116300 [exp] 69 / 3e-14 AT3G02430 94 / 9e-24 Protein of unknown function (DUF679) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05078 [flax] [poplar] DUF679 Protein of unknown function (DUF679)
Representative CDS sequence Show only first row Show all	>Lus10012734 pacid=23148222 polypeptide=Lus10012734 locus=Lus10012734.g ID=Lus10012734.BGIv1.0 annot-version=v1.0 ATGTCAACAACTACAACATCATCATCATCCTTACGACCAAGACCCACGACCAACAAACTCCCACCCGATTCCCAACCACCGCCCGACATCCCTCCGCCGC CGGCAACCACGCACAAAACCTTATCCCAGCGAGCAATCTCCCAAACGCTAACCACAACAGCCAACCTAGCAAACCTCCTCCCTACCGGAACCGTCCTAGC CTTCCAGCTCCTCACCCCACTCTTCACCAAAAACGGCTCCTGCTCCGCCGCCTCCGCCGCCCCTCTAACCCTCGCCCTCCTCTCCCTCCTCGCCGCCTCC TGCTTCCTCGCCTCCTTCACCGACTCCGTCGTCGTTGCCACTGGAGGAGAACATAAATCGGTGTACTACGGGCTGGCGACGAAGACAGGCATGTTTCTGT TTGATTCCCCCGCCGGCGCCGTCGGGAAGGAGGAGCTGAGCAAGTACAAAATTCGGTTCGTTGACTGGGTCCACGCGGTTCTGTCGGTGTTGGTTTTTGT TTCCGTGGCGTTGAGGGACAGGAACGTGGTCAGCTGTTTCTACCCGCTTCCCGGAGAGGATACGAAGCAGGTTCTGGACGTTGTTCCGATCGGGATCGGC GTCTTTTGTAGCTTGTTGTTTGTCGTTTTCCCTACACGCCGGCATGGGATTGGTTACCCTCTTACCCCGCTGACCAAATAA
AA sequence Show only first row Show all	>Lus10012734 pacid=23148222 polypeptide=Lus10012734 locus=Lus10012734.g ID=Lus10012734.BGIv1.0 annot-version=v1.0 MSTTTTSSSSLRPRPTTNKLPPDSQPPPDIPPPPATTHKTLSQRAISQTLTTTANLANLLPTGTVLAFQLLTPLFTKNGSCSAASAAPLTLALLSLLAAS CFLASFTDSVVVATGGEHKSVYYGLATKTGMFLFDSPAGAVGKEELSKYKIRFVDWVHAVLSVLVFVSVALRDRNVVSCFYPLPGEDTKQVLDVVPIGIG VFCSLLFVVFPTRRHGIGYPLTPLTK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G02430			Protein of unknown function (D...		Lus10012734 [exp]	0	1
AT5G16880			Target of Myb protein 1 (.1.2....		Lus10005924 [exp]	1.7	0.9206
AT1G06890			nodulin MtN21 /EamA-like trans...		Lus10042217 [exp]	2.4	0.9236
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Lus10004139 [exp]	3.6	0.9271
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Lus10014631 [exp]	6.0	0.9067
AT3G47670			Plant invertase/pectin methyle...		Lus10008625 [exp]	7.1	0.8992
AT1G78310			VQ motif-containing protein (....		Lus10010348 [exp]	7.1	0.9066
AT2G21190			ER lumen protein retaining rec...		Lus10012176 [exp]	8.1	0.9108
AT1G69310	WRKY	ATWRKY57, WRKY5...	WRKY DNA-binding protein 57 (....		Lus10037094 [exp]	10.4	0.8880
AT2G26170		CYP711A1, MAX1	MORE AXILLARY BRANCHES 1, "cyt...		Lus10013133 [exp]	12.3	0.9099
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10036432 [exp]	14.0	0.9032

Compare expression of checked genes

Lus10012734 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.