Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37530 606 / 0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G55130 49 / 4e-06 SIR1, CNX5 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) AT1G05350 42 / 0.001 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002651 [exp] 767 / 0 AT5G37530 660 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10000697 [exp] 45 / 0.0001 AT5G55130 643 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2) Lus10022510 [exp] 45 / 0.0001 AT5G55130 651 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G083200 [exp] 642 / 0 AT5G37530 646 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.015G096300 [exp] 49 / 4e-06 AT1G05350 571 / 0.0 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G355800 [exp] 43 / 0.0004 AT5G55130 683 / 0.0 SIRTINOL RESISTANT 1, "co-factor for nitrate, reductase and xanthine dehydrogenase 5", co-factor for nitrate, reductase and xanthine dehydrogenase 5 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00899 [flax] [poplar] ThiF ThiF family
Representative CDS sequence Show only first row Show all	>Lus10012735 pacid=23148187 polypeptide=Lus10012735 locus=Lus10012735.g ID=Lus10012735.BGIv1.0 annot-version=v1.0 ATGGAGCAGAGAGTAAAATGTTTGGCCTTGCTGGGAGCAGGGGTTGCTCTCGGCTCCATGTCCACCTACCTCCTCCTCAAGCTTCTTTCCAGAAAGAGTT CTACACCGAGGAAGAATGTTGGATTGAACGGTAACGCCATTGTGCTTGAGGATTCTGTGAAATGCTCCTCTTCAGATAGATGTCATGGGATGTCAGGTTC AGACCTCTTAAAGGATGACATAGTTTCTGAACAGCTTACCAGGAACATTCAGTTCTTTGGTTTCGAATCCCAAGAGAAGGTGACGGTATCCTATGTTGTC GTCATTGGTCTAGGAGGTGTTGGAAGTCATGCCGCATCTATGCTTTTGAGGTCGGGAGTTGGAAGGCTACTCTTAGTGGACTTTGACCAGGTTTCTGTTT CGTCCTTAAACCGACATGCTGTGGCGACACGAGAAGATGTTGGCATACCGAAGGCGGAGTGCTTGAAGAAGCACTTTTCATCAATCTTCCCAGAGTGCCG TGTCGAAGCCAAAGTGCTTCTGTATGATGAATCATCTGAAGAAGAGATCCTCTCAGGCCATCCTGATTTTGTGCTGGACTGCATTGATAATATCGACACA AAGGTGGCGCTTCTAGCTGCGTGTGCTCGTAGGAATTTGAAGGTTCTATCTGCAACAGTAGCTGGTGCTAGGGCTGACCCATCTAGGATCAGAGTGGCTG ACTTAAGAGAGTCAACAAATGATCCATTATCCAGAGCTGTGAGACATCGTTTAAGGAAGTATCATGGCATAGAGGGGGGTATACCTGTGGTCTTCTCTCT GGAAAAGCCAAAAGCCAAGCTGCTTCCTTTCAAGGGACCAAGTGGAGAAGAAGAGAATCCTTCTGATTATCAGATAGTACCGGGATTCAGGGTGCGGATA ATTCCTGTTTTAGGCACCATCCCCGCAATCTTCGGACAGGTGATGGCCTCCTACGTCGTGACCCAACTTGCCGGGTTTCAAGTGGAAATGGAGCCTGTGG TTAATTTGGACACGGATCATTACCAAATGCTTCACCAACGCCTTATCGAGCACGAGGAATCCCTGTATGGCACAGCCGTTGAGGTTGAGGTGGATGTCGA GGAAGTGAAATATGTCGTAAAAGAACTATGGCATGGACGGAGTGCCAGGGATCAGTTTGTGAAAGATGTCGGACGAGGAATGTGGCGAGCAATTAATGAA TTAATGCTTGTGAGGTGGGACGCAGAGAAGCCAGCTTCTGTGTCAAATCTCATCCTTCTCAAGTTTAAAGAGGCTGATGAACACGAATCGAGAACATTGA ACGAAATCAAGCAGGAGGAACCGGAGTTCTTCCAGAGGGTCACGGCTGCCCTGAACCGAGCACAACTCGAGTTTGACTCGTGA
AA sequence Show only first row Show all	>Lus10012735 pacid=23148187 polypeptide=Lus10012735 locus=Lus10012735.g ID=Lus10012735.BGIv1.0 annot-version=v1.0 MEQRVKCLALLGAGVALGSMSTYLLLKLLSRKSSTPRKNVGLNGNAIVLEDSVKCSSSDRCHGMSGSDLLKDDIVSEQLTRNIQFFGFESQEKVTVSYVV VIGLGGVGSHAASMLLRSGVGRLLLVDFDQVSVSSLNRHAVATREDVGIPKAECLKKHFSSIFPECRVEAKVLLYDESSEEEILSGHPDFVLDCIDNIDT KVALLAACARRNLKVLSATVAGARADPSRIRVADLRESTNDPLSRAVRHRLRKYHGIEGGIPVVFSLEKPKAKLLPFKGPSGEEENPSDYQIVPGFRVRI IPVLGTIPAIFGQVMASYVVTQLAGFQVEMEPVVNLDTDHYQMLHQRLIEHEESLYGTAVEVEVDVEEVKYVVKELWHGRSARDQFVKDVGRGMWRAINE LMLVRWDAEKPASVSNLILLKFKEADEHESRTLNEIKQEEPEFFQRVTAALNRAQLEFDS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37530			NAD(P)-binding Rossmann-fold s...		Lus10012735 [exp]	0	1
AT1G80880			Tetratricopeptide repeat (TPR)...		Lus10041669 [exp]	2.4	0.7981
AT2G19385			zinc ion binding (.1)		Lus10027626 [exp]	3.6	0.8163
AT1G05730			Eukaryotic protein of unknown ...		Lus10025588 [exp]	5.7	0.7710
AT3G07060		EMB1974	embryo defective 1974, NHL dom...		Lus10022801 [exp]	9.4	0.6869
AT5G38890			Nucleic acid-binding, OB-fold-...		Lus10003098 [exp]	11.0	0.7208
AT4G18100			Ribosomal protein L32e (.1)		Lus10004589 [exp]	13.0	0.7726
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Lus10041417 [exp]	15.2	0.7548
AT4G10650			P-loop containing nucleoside t...		Lus10014654 [exp]	15.5	0.6858
AT5G13830			FtsJ-like methyltransferase fa...		Lus10040283 [exp]	16.6	0.7422
AT2G17250		EMB2762	EMBRYO DEFECTIVE 2762, CCAAT-b...		Lus10001388 [exp]	17.5	0.7496

Compare expression of checked genes

Lus10012735 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.