Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01710 103 / 1e-25 Chaperone DnaJ-domain superfamily protein (.1) AT1G62970 79 / 4e-16 Chaperone DnaJ-domain superfamily protein (.1) AT5G09540 70 / 2e-13 Chaperone DnaJ-domain superfamily protein (.1) AT5G64360 68 / 1e-12 EIP9 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) AT5G35753 49 / 3e-06 Domain of unknown function (DUF3444) (.1) AT5G37380 47 / 1e-05 Chaperone DnaJ-domain superfamily protein (.1.2.3.4.5) AT2G05230 44 / 0.0002 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05250 44 / 0.0002 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002650 [exp] 288 / 3e-98 AT5G64360 108 / 3e-28 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) Lus10009275 [exp] 81 / 6e-17 AT2G01710 300 / 2e-100 Chaperone DnaJ-domain superfamily protein (.1) Lus10015891 [exp] 81 / 7e-17 AT2G01710 310 / 2e-104 Chaperone DnaJ-domain superfamily protein (.1) Lus10037698 [exp] 81 / 8e-17 AT5G64360 184 / 9e-51 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) Lus10015692 [exp] 80 / 2e-16 AT5G64360 179 / 5e-50 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) Lus10027316 [exp] 55 / 3e-08 AT2G35540 383 / 1e-126 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10006380 [exp] 53 / 2e-07 AT5G35753 420 / 2e-136 Domain of unknown function (DUF3444) (.1) Lus10012334 [exp] 52 / 3e-07 AT5G35753 414 / 3e-134 Domain of unknown function (DUF3444) (.1) Lus10001744 [exp] 50 / 1e-06 AT2G05250 322 / 5e-103 DNAJ heat shock N-terminal domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G105500 [exp] 104 / 2e-25 AT2G01710 308 / 1e-103 Chaperone DnaJ-domain superfamily protein (.1) Potri.005G156100 [exp] 101 / 2e-24 AT2G01710 313 / 9e-106 Chaperone DnaJ-domain superfamily protein (.1) Potri.017G044600 [exp] 79 / 3e-16 AT5G64360 189 / 3e-53 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) Potri.007G114800 [exp] 76 / 6e-15 AT5G09540 155 / 9e-43 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G221000 [exp] 56 / 2e-08 AT2G05230 696 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G165600 [exp] 53 / 1e-07 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.013G029500 [exp] 53 / 2e-07 AT3G04980 524 / 6e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.010G018800 [exp] 51 / 6e-07 AT5G18750 446 / 3e-142 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G097800 [exp] 49 / 2e-06 AT2G35540 235 / 4e-69 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 49 / 2e-06 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012736 pacid=23148182 polypeptide=Lus10012736 locus=Lus10012736.g ID=Lus10012736.BGIv1.0 annot-version=v1.0 ATGGAGCCCAGTCACGAATATGAAACCCTACTAAGTTTCTCCTCCAAACTCCTCGGCATCCGCGACTTCATCGGCGCCAGAGACCACGCCCTCGAAGCCC AGAAATTCAACCCTAACCGACCGGAGCCTCAACAGGTCATCGCCATTGCCGACGTCCTCCTCGCGGCCGCCGACGACTGGGCTTCCGTGCTCCAGCTGAA GACCCCGGCCGCCGTCGCTGACCGCGCATGCATTAGAAGCCAGTTCACCAAGCTCGCTGCCCTAGTTCAGCCTTCCAGAAACGGATTCCCCTTCAGCGAA GAAGCGTTCAACCGCGTCTTCTCGGCGATGAAATCGGTTGAGAAATTGAAGGAAGGAGGAGATGATAAATCTTCTCCTTCTTCTTCTTCTTCGACTTTCT GGACGGTTTGCCCTTACTGCTACTGCGCGCACGAGTACTTGATTGAGTACGAGGATTGCTGCCTCCGGTGCCAGAATTGCCGGAGAGGATTCCATGGGGT CGCGGCGGCGCTGCCTACGCCGGCGGCGGTTGAAGGCAGCTCCTCGAAGCAGGAGTATTACTGTGGATATGGATTTTTCCCTCTCAAGTATGAGAAACCG TCTGACGAGAAGGAGGAGAAGAAGGAAGGCATTCCGGTTGATGTGATGGAAATCTCTGATGATAGTGAGGAAGAGAAGAAGGAGAAGGAGAAGGAGATGG AGATGGAGATGGAGAAGAAGAAGAAGACGGGGAAATATATGAAATCAATCCCTAAATGCTCGAGGAAAGTGACTGGAACAGGGAAGAGGAATACTATTGT TGAAGAAGAGGGAAAGTGTGCTACTGGTAAATCTAATGCAGAGGAAGAGACTGAGGATGGTGATTTTGATCTGGAGTATCTGTTGAAGGAGGACGATGTT TATGTTAGTTTGAAGGATGTAGTGTAA
AA sequence Show only first row Show all	>Lus10012736 pacid=23148182 polypeptide=Lus10012736 locus=Lus10012736.g ID=Lus10012736.BGIv1.0 annot-version=v1.0 MEPSHEYETLLSFSSKLLGIRDFIGARDHALEAQKFNPNRPEPQQVIAIADVLLAAADDWASVLQLKTPAAVADRACIRSQFTKLAALVQPSRNGFPFSE EAFNRVFSAMKSVEKLKEGGDDKSSPSSSSSTFWTVCPYCYCAHEYLIEYEDCCLRCQNCRRGFHGVAAALPTPAAVEGSSSKQEYYCGYGFFPLKYEKP SDEKEEKKEGIPVDVMEISDDSEEEKKEKEKEMEMEMEKKKKTGKYMKSIPKCSRKVTGTGKRNTIVEEEGKCATGKSNAEEETEDGDFDLEYLLKEDDV YVSLKDVV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01710			Chaperone DnaJ-domain superfam...		Lus10012736 [exp]	0	1
AT5G67320		HOS15	high expression of osmotically...		Lus10010384 [exp]	3.3	0.8935
AT5G06540			Pentatricopeptide repeat (PPR)...		Lus10031430 [exp]	7.4	0.8461
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Lus10012737 [exp]	11.7	0.8893
AT2G37510			RNA-binding (RRM/RBD/RNP motif...		Lus10003980 [exp]	13.4	0.8389
AT3G53270			Small nuclear RNA activating c...		Lus10008478 [exp]	16.0	0.8497
AT5G49555			FAD/NAD(P)-binding oxidoreduct...		Lus10014308 [exp]	20.5	0.8472
AT5G38200			Class I glutamine amidotransfe...		Lus10016700 [exp]	34.1	0.8285
AT1G03280			Transcription factor TFIIE, al...		Lus10019269 [exp]	37.3	0.8313
AT3G63095			Tetratricopeptide repeat (TPR)...		Lus10028013 [exp]	38.2	0.7582
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10015091 [exp]	49.7	0.7521

Compare expression of checked genes

Lus10012736 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.