Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38070 57 / 8e-09 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G41130 44 / 3e-05 bHLH bHLH106 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G56770 43 / 0.0001 bHLH bHLH107 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002649 [exp] 229 / 3e-76 AT4G38070 81 / 2e-18 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042017 [exp] 42 / 0.0003 AT2G41130 204 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G010500 [exp] 103 / 1e-26 AT4G38070 149 / 5e-41 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10012737 pacid=23148193 polypeptide=Lus10012737 locus=Lus10012737.g ID=Lus10012737.BGIv1.0 annot-version=v1.0 ATGGAGAATAGGAAATGGATGAACAAAGGAAGTTTAGTTTACAATGATCAAGGTTCCTTCTTGAAAGGTATCATAGCTCTTACTGGAGGTACCTTGTCGA TAATGCGACATCAAATGACCGAAGCTGCGAGAATGCTCGAAATACGAGAGGCACAACGCATTTCGAGTTTCTACAAGTCAAGAGCACATCCGAACTCGAT TGACTATCGTCAAGTAGCTAGCTATCTGAGGAGGACAACATCAAACAGGGACGAGGCTAAACAGATCAGCAAAGAGAAGCACAAGTACTCCGAGAGGGAT CGAAGGAGTCGAGTTAGCAGCCTATACTCGAGCTTGCGAATGATCCTCCCTACCTTGGTCAAAGTAAGTCTCCCCCACCCGACTTGCTTCACTGAAACAG TTCAATGTCAAGGACTAACCCTAACCTCCATGGCTCGGTATGAATCTAAACCGAAGAACAAAGCATCGGTGCTTCATGAGACAATCCGGCAAGTGAGGCG GATGAACTCAGCAGCATCGGCACTGAATGCAATATGCGGAGGTGGGTCGGACTGCCTATATCCCGGAGGAGATGACCACGTAAAGGTAGAGAACAACGTC GACAAAGGGAAAGGCATCGATCGGCTTGTAAAGGTTACGGTGAGCTGCAACGAGAGAAGCGATCTACTGGTGGATATTGGGAAGGCAGTGAGGTCGGTGA AGGCGAAGGTGGTGAGAGCAGAGATGGTGACGGTAGGTGGGAGGACCAAGTGTGTGTTTTGGGTTAAAGGGGTGGATGGGTTTGAAGGGAGGAGGATGCT TAGCATGGCTGTCGATGCTGCAGCCAGAGGCCATAATCATACTGTTGCTTGA
AA sequence Show only first row Show all	>Lus10012737 pacid=23148193 polypeptide=Lus10012737 locus=Lus10012737.g ID=Lus10012737.BGIv1.0 annot-version=v1.0 MENRKWMNKGSLVYNDQGSFLKGIIALTGGTLSIMRHQMTEAARMLEIREAQRISSFYKSRAHPNSIDYRQVASYLRRTTSNRDEAKQISKEKHKYSERD RRSRVSSLYSSLRMILPTLVKVSLPHPTCFTETVQCQGLTLTSMARYESKPKNKASVLHETIRQVRRMNSAASALNAICGGGSDCLYPGGDDHVKVENNV DKGKGIDRLVKVTVSCNERSDLLVDIGKAVRSVKAKVVRAEMVTVGGRTKCVFWVKGVDGFEGRRMLSMAVDAAARGHNHTVA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Lus10012737 [exp]	0	1
AT3G53270			Small nuclear RNA activating c...		Lus10008478 [exp]	1.4	0.9388
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10041646 [exp]	10.5	0.8794
AT2G01710			Chaperone DnaJ-domain superfam...		Lus10012736 [exp]	11.7	0.8893
AT3G53270			Small nuclear RNA activating c...		Lus10001478 [exp]	12.0	0.8889
AT4G18930			RNA ligase/cyclic nucleotide p...		Lus10002767 [exp]	14.3	0.9171
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10036014 [exp]	19.8	0.9262
AT4G08320		TPR8	tetratricopeptide repeat 8, Te...		Lus10025656 [exp]	21.4	0.9171
AT2G29070			Ubiquitin fusion degradation U...		Lus10029298 [exp]	29.9	0.9072
AT2G44810		DAD1	DEFECTIVE ANTHER DEHISCENCE 1,...		Lus10041165 [exp]	31.3	0.8721
AT4G10270			Wound-responsive family protei...		Lus10018530 [exp]	34.0	0.9112

Compare expression of checked genes

Lus10012737 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.