Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22480 828 / 0 PFK5 phosphofructokinase 5 (.1) AT4G26270 382 / 7e-128 PFK3 phosphofructokinase 3 (.1) AT5G56630 379 / 9e-127 PFK7 phosphofructokinase 7 (.1) AT4G29220 376 / 1e-125 PFK1 phosphofructokinase 1 (.1) AT5G61580 374 / 3e-124 PFK4 phosphofructokinase 4 (.1.2) AT4G32840 371 / 6e-124 PFK6 phosphofructokinase 6 (.1) AT5G47810 330 / 5e-108 PFK2 phosphofructokinase 2 (.1) AT4G04040 65 / 7e-11 MEE51 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1) AT1G12000 64 / 2e-10 Phosphofructokinase family protein (.1) AT1G20950 52 / 1e-06 Phosphofructokinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002648 [exp] 1004 / 0 AT2G22480 868 / 0.0 phosphofructokinase 5 (.1) Lus10005488 [exp] 383 / 1e-127 AT4G32840 765 / 0.0 phosphofructokinase 6 (.1) Lus10006032 [exp] 378 / 9e-127 AT4G26270 742 / 0.0 phosphofructokinase 3 (.1) Lus10011143 [exp] 379 / 2e-125 AT4G26270 837 / 0.0 phosphofructokinase 3 (.1) Lus10035001 [exp] 376 / 5e-125 AT4G26270 812 / 0.0 phosphofructokinase 3 (.1) Lus10043044 [exp] 380 / 2e-124 AT4G26270 840 / 0.0 phosphofructokinase 3 (.1) Lus10008812 [exp] 346 / 8e-114 AT5G47810 697 / 0.0 phosphofructokinase 2 (.1) Lus10039993 [exp] 139 / 1e-38 AT5G47810 236 / 5e-77 phosphofructokinase 2 (.1) Lus10037972 [exp] 61 / 2e-09 AT4G04040 498 / 9e-173 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G010300 [exp] 838 / 0 AT2G22480 816 / 0.0 phosphofructokinase 5 (.1) Potri.018G069200 [exp] 378 / 3e-126 AT4G26270 808 / 0.0 phosphofructokinase 3 (.1) Potri.006G152600 [exp] 379 / 1e-125 AT4G26270 827 / 0.0 phosphofructokinase 3 (.1) Potri.003G151100 [exp] 377 / 1e-125 AT5G61580 797 / 0.0 phosphofructokinase 4 (.1.2) Potri.016G002700 [exp] 361 / 6e-120 AT5G47810 643 / 0.0 phosphofructokinase 2 (.1) Potri.006G235066 [exp] 178 / 2e-52 AT4G26270 331 / 7e-113 phosphofructokinase 3 (.1) Potri.006G235132 [exp] 176 / 2e-51 AT4G26270 399 / 3e-139 phosphofructokinase 3 (.1) Potri.001G079501 [exp] 116 / 5e-30 AT5G61580 235 / 2e-75 phosphofructokinase 4 (.1.2) Potri.011G015900 [exp] 62 / 6e-10 AT1G12000 960 / 0.0 Phosphofructokinase family protein (.1) Potri.006G281900 [exp] 62 / 6e-10 AT1G12000 960 / 0.0 Phosphofructokinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [flax] [poplar] PFK PF00365 [flax] [poplar] PFK Phosphofructokinase
Representative CDS sequence Show only first row Show all	>Lus10012738 pacid=23148180 polypeptide=Lus10012738 locus=Lus10012738.g ID=Lus10012738.BGIv1.0 annot-version=v1.0 ATGGATACTCCTCTCACGTCCCGTACTGCCGTTACTAATCCCAAGAGGAGGACGCTCTCTTCTTGCTCCTCTTCTTCTCTCCTGTTTCCTCGATCACGCC GCCGTACCAATGCCTTCGTCCCCTTCACTGCCGGGAATCTTAGCAGAATCGTTCGAGTACGTGCCGAGATTGGTAAGCGGACTGCTCCTGCTGTCGATTT CAGTGATCCGGAGTGGAAGATCAAGTACCAGAAGGACTTTGAGCGCCGCTTCAGTATTCCGCATATCACTGATGTCTTCCCCGATGCTGAGCCGATTCCT TCTACTTTTTGTCTGCGGATGAGGACTCCGGTGTCCGAGGATTTTGCAGGTGTTTATCCGTCCGACGAGGAATGGCAGGGATATATTAATAATAATGATC GGGTGCTTCTTAAGACCATAAATTTTGCATCGCCCTCCTCTGCTGGAGCAGTGTGCATTGACCCGGACTGTACCTGGGTTGAACAATGGGTTCACCGTGC TGGACCTCGAGAGAAGATCTACTTCAAACCTGACGAAGTAAAGGCAGGCATTGTTACTTGTGGCGGATTATGTCCTGGTCTCAATGATGTCATCAGACAG GTTGTTATTACACTTGAAATATATGGTGTCAAAAGCATTGTGGGGATTCCTTTTGGTTATCGTGGATTTTCTGACAAAGACTTGAGTGAAATGCCACTAT CAAGGAAAGTGGTCCAAAATATACATCTTTCTGGTGGAAGTTTGTTAGGAGTATCACGTGGAGGCCCCAGCGTCAGTGATATTGTTGATAGCATGCAGGA AAGGGAAATCAACATGCTCTTTGTACTAGGTGGGAATGGTACACATGCCGGGGCCAATGCTATACACGAAGAGTGTCGTAGAAGGAATCTTAAGGTGGCT GTCGTTGGGGTGCCAAAAACAATAGATAATGACATCTTATTGATGGATAAAACTTTTGGTTTTGACACTGCCGTAGAAGAAGCACAACGAGCTATAAACT CTGCTTACATCGAGGCCCACAGTGCTTATCATGGAGTTGGCATTGTGAAATTAATGGGACGTGACAGTGGGTTTATAGCAATGCACGCATCACTAGCTAG TGGACAGATTGATATTTGCTTGATCCCAGAGGTATCTTTCCAATTACATGGACCTCATGGTGTCTTAACCCACCTCAAATATCTGATCGAGACAAAGGGA TCAGCTGTCCTCTGTGTGGCAGAGGGAGCTGGGCAGAACTTGCTTCAGAAAACCAATGCTAAGGATGCATCCGGGAATGTTGTATTCGGAGACATAGGTG TACACATCCAACAAGAGACCAAGAAATATTTCAGGGAGATTGGCGTCCATGCTGATGTAAAGTACATTGATCCGACATATATGATCCGCGCATGCCGTGC AAATGCATCAGACGGAATATTATGTGCTGTTCTTGGACAGAATGCGGTCCATGGCGCATTCGCGGGATACAGTGGGATTACAGTAGGGATATGCAACACA CACTACGTCTACTTCCCGATTCCTGAAGTGATCGCTTACCCAAGACCCGTAGATCCCAACAGCAGGATGTGGCATCGTTGCTTGACTTCGACAGGGCAAC CCGACTTCATCTAA
AA sequence Show only first row Show all	>Lus10012738 pacid=23148180 polypeptide=Lus10012738 locus=Lus10012738.g ID=Lus10012738.BGIv1.0 annot-version=v1.0 MDTPLTSRTAVTNPKRRTLSSCSSSSLLFPRSRRRTNAFVPFTAGNLSRIVRVRAEIGKRTAPAVDFSDPEWKIKYQKDFERRFSIPHITDVFPDAEPIP STFCLRMRTPVSEDFAGVYPSDEEWQGYINNNDRVLLKTINFASPSSAGAVCIDPDCTWVEQWVHRAGPREKIYFKPDEVKAGIVTCGGLCPGLNDVIRQ VVITLEIYGVKSIVGIPFGYRGFSDKDLSEMPLSRKVVQNIHLSGGSLLGVSRGGPSVSDIVDSMQEREINMLFVLGGNGTHAGANAIHEECRRRNLKVA VVGVPKTIDNDILLMDKTFGFDTAVEEAQRAINSAYIEAHSAYHGVGIVKLMGRDSGFIAMHASLASGQIDICLIPEVSFQLHGPHGVLTHLKYLIETKG SAVLCVAEGAGQNLLQKTNAKDASGNVVFGDIGVHIQQETKKYFREIGVHADVKYIDPTYMIRACRANASDGILCAVLGQNAVHGAFAGYSGITVGICNT HYVYFPIPEVIAYPRPVDPNSRMWHRCLTSTGQPDFI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G22480		PFK5	phosphofructokinase 5 (.1)		Lus10012738 [exp]	0	1
AT3G54020		AtIPCS1	Arabidopsis Inositol phosphory...		Lus10021111 [exp]	2.0	0.9155
AT2G05710		ACO3	aconitase 3 (.1)		Lus10027165 [exp]	3.2	0.9332
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10035118 [exp]	7.7	0.9252
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Lus10033144 [exp]	9.0	0.9029
AT4G27730		ATOPT6	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10022372 [exp]	10.0	0.9022
AT5G60700			glycosyltransferase family pro...		Lus10037396 [exp]	11.6	0.9188
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10013806 [exp]	12.4	0.9037
AT1G27340			Galactose oxidase/kelch repeat...		Lus10037030 [exp]	12.5	0.9069
AT2G47800		EST3, ATMRP4, A...	ATP-binding cassette C4, multi...		Lus10011498 [exp]	12.6	0.8767
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Lus10026568 [exp]	14.4	0.8534

Compare expression of checked genes

Lus10012738 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.