Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38100 109 / 9e-30 unknown protein AT4G01150 87 / 1e-21 unknown protein AT2G46820 56 / 9e-10 PSI-P, TMP14, PTAC8, PSAP THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2) AT1G52220 50 / 7e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002647 [exp] 291 / 3e-101 AT4G38100 130 / 5e-38 unknown protein Lus10010132 [exp] 85 / 2e-20 AT4G01150 215 / 2e-72 unknown protein Lus10012645 [exp] 84 / 2e-20 AT4G01150 212 / 3e-71 unknown protein Lus10003031 [exp] 71 / 2e-15 AT4G01150 153 / 3e-48 unknown protein Lus10030191 [exp] 54 / 7e-09 AT2G46820 169 / 4e-54 THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2) Lus10002673 [exp] 51 / 6e-08 AT2G46820 170 / 2e-54 THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G147801 [exp] 106 / 6e-29 AT4G38100 107 / 1e-29 unknown protein Potri.014G093900 [exp] 86 / 5e-21 AT4G01150 181 / 3e-59 unknown protein Potri.002G166800 [exp] 84 / 2e-20 AT4G01150 188 / 6e-62 unknown protein Potri.014G106400 [exp] 59 / 9e-11 AT2G46820 154 / 2e-48 THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2) Potri.001G184700 [exp] 57 / 2e-10 AT1G52220 160 / 3e-51 unknown protein Potri.002G180400 [exp] 50 / 2e-07 AT2G46820 137 / 1e-41 THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA, PLASTID TRANSCRIPTIONALLY ACTIVE 8, photosystem I P subunit (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012739 pacid=23148168 polypeptide=Lus10012739 locus=Lus10012739.g ID=Lus10012739.BGIv1.0 annot-version=v1.0 ATGGAGATCTGCACTTCTAAATCCGCCGCCATCAATACTCTCCCCAAACTCCCCACCATTTCCTGCTCTACTCGGCCCCTCTCCCGCCTCCGTCTCTCTC GCTCCCTCCGCGCTACCACATCGTTGCGGTGTACTCCAAGGACGAACACTTCGGAGGAGACTCAAGTCGGAGGAGGGAGCCCTTACGTTGTCGAGGAATC CAACGGTTTCGGCGGAAGTAGTAGCGCAGCGGAGGAAACCGACGCGAAAACTCTCGCCGTTGAAGCTGTTGTTGATTACGATGAAAACGTGGCGGAAGAA CAGCCAAGTGAAGGAGCTGCTGCTGCTTTCCCCGAGACTGTAAATGAGTTTCTATCTGATCTCAATCTCAAGTTCGACTCTGAGGACACAGTATCCCTTG TGATCTACGGCAGCGGAGCTCTTCTCGCCGTTTGGTTGCTGTCGGCTGTTGTCAACGCTGTCGATTCCATTCCATTGTTTCCGAAGCTGATGGAAGTTGT AGGACTTGGCTACTCATTCTGGTTCACCACCCGATACTTGCTGTTTAAGAAAAACAGGGAAGAGCTGGCTGAGAAAGTTGAAGAGCTCAAACAACAGGTT CTTGGAACAAAAGATGACTGA
AA sequence Show only first row Show all	>Lus10012739 pacid=23148168 polypeptide=Lus10012739 locus=Lus10012739.g ID=Lus10012739.BGIv1.0 annot-version=v1.0 MEICTSKSAAINTLPKLPTISCSTRPLSRLRLSRSLRATTSLRCTPRTNTSEETQVGGGSPYVVEESNGFGGSSSAAEETDAKTLAVEAVVDYDENVAEE QPSEGAAAAFPETVNEFLSDLNLKFDSEDTVSLVIYGSGALLAVWLLSAVVNAVDSIPLFPKLMEVVGLGYSFWFTTRYLLFKKNREELAEKVEELKQQV LGTKDD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G38100			unknown protein		Lus10012739 [exp]	0	1
AT3G49910			Translation protein SH3-like f...		Lus10028537 [exp]	6.0	0.8656
AT5G09995			unknown protein		Lus10035858 [exp]	7.9	0.8128
AT1G70600			Ribosomal protein L18e/L15 sup...		Lus10006207 [exp]	8.6	0.8649
AT3G08900		RGP3	reversibly glycosylated polype...		Lus10004640 [exp]	9.2	0.8609
AT4G27490			3'-5'-exoribonuclease family p...		Lus10037395 [exp]	13.3	0.8457
AT1G23290		RPL27A, RPL27AB	RIBOSOMAL PROTEIN L27A, Riboso...		Lus10016336 [exp]	13.6	0.8589
AT3G18580			Nucleic acid-binding, OB-fold-...		Lus10027237 [exp]	15.4	0.8531
AT2G15000			unknown protein		Lus10025365 [exp]	15.4	0.8274
AT1G02370			Tetratricopeptide repeat (TPR)...		Lus10004173 [exp]	18.0	0.8548
AT3G06200			P-loop containing nucleoside t...		Lus10021947 [exp]	18.7	0.8047

Compare expression of checked genes

Lus10012739 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.