Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025731 [exp] 42 / 3e-05 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012740 pacid=23148233 polypeptide=Lus10012740 locus=Lus10012740.g ID=Lus10012740.BGIv1.0 annot-version=v1.0 ATGAATTCATCAATGGTGAAGCTATTCCTAATCCTCGGCCTACTGGCCACTTCCTGTGTCGCTCAGGCTCCAACCGCCACCCCAACTCCATCTCCCACCG CTGTCCCCACTCCTCCATCTCCATCTCCGTCTCCGGCCGCCACTCCGACTCCGACTCCTACTCCAGCACCTGCTCCGGCTCCACTCACCCCTGCTCCGAC CCCAGCTCCTACCACATCGCCGACTCCTTCGCCTTCCCCTGTCGCCTCCGCCCCCAGTCCCGACGCCGCTTCTCCTCCGGCTCCTCCTACTTCTCCAGCT GGCTCCCCCGCCGGCGGTCCGTCTTCCGACGATGTCCCTCCAAACTTCGCCGCCGGATTTGACAGAGTGATCGTTGCCGGTACTGCCGTTTCGGCTGCTT TGTTGGCCTTCGTCGTCTTGGCTTAG
AA sequence Show only first row Show all	>Lus10012740 pacid=23148233 polypeptide=Lus10012740 locus=Lus10012740.g ID=Lus10012740.BGIv1.0 annot-version=v1.0 MNSSMVKLFLILGLLATSCVAQAPTATPTPSPTAVPTPPSPSPSPAATPTPTPTPAPAPAPLTPAPTPAPTTSPTPSPSPVASAPSPDAASPPAPPTSPA GSPAGGPSSDDVPPNFAAGFDRVIVAGTAVSAALLAFVVLA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10012740 [exp]	0	1
AT1G24530			Transducin/WD40 repeat-like su...		Lus10006233 [exp]	1.0	0.8850
AT5G56040			Leucine-rich receptor-like pro...		Lus10042090 [exp]	1.4	0.8752
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10007525 [exp]	2.2	0.8549
AT1G05070			Protein of unknown function (D...		Lus10035288 [exp]	2.4	0.8408
AT1G73880		UGT89B1	UDP-glucosyl transferase 89B1 ...		Lus10021718 [exp]	2.8	0.8560
AT3G02645			Plant protein of unknown funct...		Lus10009504 [exp]	3.0	0.8565
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Lus10011476 [exp]	6.0	0.8187
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Lus10027573 [exp]	6.6	0.8189
AT4G36750			Quinone reductase family prote...		Lus10011292 [exp]	8.4	0.7642
AT3G06890			unknown protein		Lus10006514 [exp]	10.8	0.7775

Compare expression of checked genes

Lus10012740 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.