Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65380 655 / 0 MATE efflux family protein (.1) AT5G44050 612 / 0 MATE efflux family protein (.1) AT5G10420 607 / 0 MATE efflux family protein (.1) AT1G33100 442 / 6e-152 MATE efflux family protein (.1) AT1G33110 440 / 2e-151 MATE efflux family protein (.1.2) AT1G33080 437 / 6e-150 MATE efflux family protein (.1.2) AT1G33090 431 / 2e-147 MATE efflux family protein (.1) AT1G47530 428 / 1e-146 MATE efflux family protein (.1) AT3G26590 410 / 1e-139 MATE efflux family protein (.1) AT1G61890 409 / 6e-139 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002645 [exp] 899 / 0 AT5G65380 706 / 0.0 MATE efflux family protein (.1) Lus10024945 [exp] 663 / 0 AT5G65380 651 / 0.0 MATE efflux family protein (.1) Lus10015903 [exp] 616 / 0 AT5G65380 641 / 0.0 MATE efflux family protein (.1) Lus10020952 [exp] 612 / 0 AT5G65380 629 / 0.0 MATE efflux family protein (.1) Lus10020951 [exp] 510 / 6e-179 AT5G65380 543 / 0.0 MATE efflux family protein (.1) Lus10003869 [exp] 454 / 8e-157 AT1G33110 670 / 0.0 MATE efflux family protein (.1.2) Lus10042130 [exp] 429 / 5e-147 AT1G47530 704 / 0.0 MATE efflux family protein (.1) Lus10036854 [exp] 417 / 5e-142 AT3G26590 666 / 0.0 MATE efflux family protein (.1) Lus10006206 [exp] 414 / 9e-141 AT3G26590 664 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G010200 [exp] 745 / 0 AT5G65380 696 / 0.0 MATE efflux family protein (.1) Potri.002G102100 [exp] 621 / 0 AT5G65380 636 / 0.0 MATE efflux family protein (.1) Potri.005G160700 [exp] 566 / 0 AT5G65380 479 / 1e-166 MATE efflux family protein (.1) Potri.013G069700 [exp] 460 / 3e-159 AT1G33110 655 / 0.0 MATE efflux family protein (.1.2) Potri.002G102000 [exp] 444 / 2e-154 AT5G65380 437 / 7e-152 MATE efflux family protein (.1) Potri.011G002900 [exp] 421 / 1e-143 AT3G21690 654 / 0.0 MATE efflux family protein (.1) Potri.019G063500 [exp] 421 / 4e-143 AT3G26590 681 / 0.0 MATE efflux family protein (.1) Potri.011G002800 [exp] 416 / 1e-141 AT3G21690 656 / 0.0 MATE efflux family protein (.1) Potri.011G002700 [exp] 411 / 1e-139 AT3G21690 646 / 0.0 MATE efflux family protein (.1) Potri.008G187100 [exp] 410 / 1e-139 AT3G26590 661 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10012741 pacid=23148179 polypeptide=Lus10012741 locus=Lus10012741.g ID=Lus10012741.BGIv1.0 annot-version=v1.0 ATGGCGGAATCAAAGGTTCCCCTGTTGCTAAAAAGCGGCCGCACTTCCGATGAGGACGGAAGCAGAGGACATGATTTGGCGAAGAAGGTGTGGACCGAGA CGCAGAAGCTATGGAACATAGTGGGTCCTGCCATATTCAGCAGAGTCGCTTCCTACTCCATGCTTGTCATCACTCAAGCCTTCGCCGGCCACCTCGGCGA CCTCGAACTCGCCGGCATCTCCATCGCCAATAATGTCATCGTCGGCTTCGACTTCGGCCTCTTGTTGGGGATGGCGAGCGCTCTCGAAACGCTATGTGGC CAGGCGTACGGAGCGAAGAAGTACTACATGCTAGGAGTATACATGCAGAGATCATGGATCGTCCTGTTCCTCTGCTGCATCCTCCTCCTACCGCTCTACC TCTTCGCCTCCCCCTTCCTGAAACTGCTCGGACAGCCAGATGATGTGTCCGAGGTTTCAGGAATCGCGGCCTTGTGTATGATTCCGCTCCATTTCAGCTT CGCCTTCCAGTTCCCGCTCCAGAGGTTCCTACAGAGCCAGCTTAAGAACGCGGTGATCGCCTGGATGTCCCTGGTGGCCCTGGTGGTCCATATCGCCGTC AGCTGGCTGTTCGTGTACAAGTTGCAGCTTGGCGTGATCGGGACCGCCATGACTCTGAACTTTTCGTGGTGGGTTCTCGCATTCGGTTGCCTTGCTTACA CCGTATGTGGCGGGTGTCCTCTCACTTGGACCGGGTTCTCCATGGAAGCCTTCGCAGGTCTCTGGGACTTCGCCAAGCTCTCTGCTTCTTCTGGCGTCAT GCTCTGTCTGGAGAATTGGTACTACAGAATACTAATCTTGATGACTGGGAATCTGAAGAATGCAGAGATCGCCGTGGATGCTTTGTCCATTTGCATGACC ATCAATGGTTGGGAACTGATGATTCCGTTTGCCTTCTTTGCCGGAATCGGAGTGAGGGTGGCGAACGAGCTAGGAGCCGGAAACGGGAAAGGAGCCCGGT TTGCAACCATAGTCGCGGTCTCGCAGTCGGTGATGATTGGACTCTTCTTCTGGTTGCTCCTTACACTTTACAACGATCAAATCGGGTGGATCTTCACCAA CAGCGAACCGGTTCTAACCGCGGTCAACCAACTCTCTACCTTACTTGCTTTCACAATTTTACTCAACAGCGTTCAGCCAGTTCTCTCCGGAGTGGCCGTG GGCTCTGGTTGGCAAAAGTACGTGGCCTACATCAACTTGGGCTGCTACTATCTCATTGGAGTCCCCCTTGGATTTATCATGGGCTGGGCTTTCGACCTCG GTGTAAAGGGGATTTGGGCTGGAATGATATTTGGTGGAACAGCCATCCAGACATTGATATTAGCCATCATAACAATTCGATGTGACTGGGAGAAAGAGGC TGACAAGGCAAAATTGCATGTAACGAAATGGTCAGAAGTTCACTGA
AA sequence Show only first row Show all	>Lus10012741 pacid=23148179 polypeptide=Lus10012741 locus=Lus10012741.g ID=Lus10012741.BGIv1.0 annot-version=v1.0 MAESKVPLLLKSGRTSDEDGSRGHDLAKKVWTETQKLWNIVGPAIFSRVASYSMLVITQAFAGHLGDLELAGISIANNVIVGFDFGLLLGMASALETLCG QAYGAKKYYMLGVYMQRSWIVLFLCCILLLPLYLFASPFLKLLGQPDDVSEVSGIAALCMIPLHFSFAFQFPLQRFLQSQLKNAVIAWMSLVALVVHIAV SWLFVYKLQLGVIGTAMTLNFSWWVLAFGCLAYTVCGGCPLTWTGFSMEAFAGLWDFAKLSASSGVMLCLENWYYRILILMTGNLKNAEIAVDALSICMT INGWELMIPFAFFAGIGVRVANELGAGNGKGARFATIVAVSQSVMIGLFFWLLLTLYNDQIGWIFTNSEPVLTAVNQLSTLLAFTILLNSVQPVLSGVAV GSGWQKYVAYINLGCYYLIGVPLGFIMGWAFDLGVKGIWAGMIFGGTAIQTLILAIITIRCDWEKEADKAKLHVTKWSEVH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65380			MATE efflux family protein (.1...		Lus10012741 [exp]	0	1
					Lus10027919 [exp]	2.8	0.9770
AT5G39160			RmlC-like cupins superfamily p...		Lus10035185 [exp]	3.7	0.9596
AT3G06490	MYB	BOS1, AtMYB108	BOTRYTIS-SUSCEPTIBLE1, myb dom...		Lus10037818 [exp]	4.2	0.9655
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Lus10032303 [exp]	4.5	0.9670
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10011310 [exp]	5.1	0.9742
AT2G38740			Haloacid dehalogenase-like hyd...		Lus10040116 [exp]	7.9	0.9688
AT5G12340			unknown protein		Lus10036031 [exp]	8.7	0.9594
AT1G72310		ATL3	RING/U-box superfamily protein...		Lus10016427 [exp]	10.0	0.9667
AT1G03940			HXXXD-type acyl-transferase fa...		Lus10039745 [exp]	10.2	0.9581
AT5G47550			Cystatin/monellin superfamily ...		Lus10039104 [exp]	10.4	0.9469

Compare expression of checked genes

Lus10012741 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.