Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70830 158 / 5e-50 MLP28 MLP-like protein 28 (.1.2.3.4.5) AT1G70850 156 / 2e-48 MLP34 MLP-like protein 34 (.1.2.3) AT1G70840 154 / 3e-48 MLP31 MLP-like protein 31 (.1) AT5G28010 148 / 6e-46 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G70890 147 / 8e-46 MLP43 MLP-like protein 43 (.1) AT1G70880 142 / 1e-43 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT5G28000 120 / 2e-35 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G23130 111 / 1e-31 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT1G35260 97 / 3e-26 MLP165 MLP-like protein 165 (.1) AT1G70860 81 / 2e-20 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020498 [exp] 293 / 2e-103 AT1G70830 160 / 7e-51 MLP-like protein 28 (.1.2.3.4.5) Lus10012466 [exp] 291 / 9e-103 AT1G70830 161 / 3e-51 MLP-like protein 28 (.1.2.3.4.5) Lus10020497 [exp] 205 / 2e-68 AT1G70840 148 / 4e-46 MLP-like protein 31 (.1) Lus10002644 [exp] 121 / 1e-36 AT1G70850 58 / 1e-11 MLP-like protein 34 (.1.2.3) Lus10012467 [exp] 97 / 5e-26 AT1G70890 80 / 5e-21 MLP-like protein 43 (.1) Lus10042490 [exp] 94 / 9e-25 AT1G14930 107 / 3e-30 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10042489 [exp] 82 / 4e-20 AT1G14960 104 / 5e-29 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10008932 [exp] 81 / 1e-18 AT4G14060 127 / 1e-36 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10033397 [exp] 78 / 1e-18 AT1G14950 121 / 1e-35 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G111000 [exp] 200 / 9e-67 AT1G70830 175 / 8e-57 MLP-like protein 28 (.1.2.3.4.5) Potri.017G051100 [exp] 133 / 3e-40 AT1G70840 115 / 3e-33 MLP-like protein 31 (.1) Potri.017G051200 [exp] 125 / 2e-37 AT1G70840 116 / 3e-34 MLP-like protein 31 (.1) Potri.008G131300 [exp] 101 / 6e-28 AT1G14930 100 / 1e-27 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.008G131200 [exp] 90 / 2e-23 AT1G14930 122 / 4e-36 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.008G131100 [exp] 84 / 4e-21 AT1G70890 107 / 3e-30 MLP-like protein 43 (.1) Potri.010G096000 [exp] 66 / 7e-14 AT1G24020 188 / 3e-62 MLP-like protein 423 (.1.2) Potri.011G025900 [exp] 44 / 7e-06 AT1G24020 55 / 7e-10 MLP-like protein 423 (.1.2) Potri.011G025966 [exp] 44 / 7e-06 AT1G24020 55 / 7e-10 MLP-like protein 423 (.1.2) Potri.011G026100 [exp] 44 / 7e-06 AT1G24020 54 / 2e-09 MLP-like protein 423 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF00407 [flax] [poplar] Bet_v_1 Pathogenesis-related protein Bet v 1 family
Representative CDS sequence Show only first row Show all	>Lus10012742 pacid=23148174 polypeptide=Lus10012742 locus=Lus10012742.g ID=Lus10012742.BGIv1.0 annot-version=v1.0 ATGAGTTGCTGTAGTCTGATCCATGGGAAGCTGGAAGCATATGTTGGAGTAAGAGTAGCTGCAGATGTTTTCCATGACATCTTCAGTTGCAGGCCTCACC ATGTCTCAAACATGGCTCCCAACAAGATCAAGAGCTGTGACATCCATGAAGGTGAATTTGGCAAACCTGGCACTGTCGTCAATTGGAACTACATCCATGA TGGAGAAGCGAAGGTGGCGAAAGAATTGATGGAGGACATTGACGACGTGAATCTGTCGACAACCTTTAAGGTGATAGAAGGTGACCTGATGAAGGAGTAC AAGAACTTCAAGATCATGGTTAAGTCCACTCCGCAGAAGAAGACTGAAGGAGTAGACTGGTGTCTGGTTCATTGGGTCATGGACTACGAGAAGCTCAAAG AGGAAACCCCCGAGCCTTTCTCCCTTCTTTCGTTTGCTGTTCACATGAGCAAAGACATCGACGACCATCACACTAAGAAGGAATGA
AA sequence Show only first row Show all	>Lus10012742 pacid=23148174 polypeptide=Lus10012742 locus=Lus10012742.g ID=Lus10012742.BGIv1.0 annot-version=v1.0 MSCCSLIHGKLEAYVGVRVAADVFHDIFSCRPHHVSNMAPNKIKSCDIHEGEFGKPGTVVNWNYIHDGEAKVAKELMEDIDDVNLSTTFKVIEGDLMKEY KNFKIMVKSTPQKKTEGVDWCLVHWVMDYEKLKEETPEPFSLLSFAVHMSKDIDDHHTKKE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70830		MLP28	MLP-like protein 28 (.1.2.3.4....		Lus10012742 [exp]	0	1
AT5G02540			NAD(P)-binding Rossmann-fold s...		Lus10024415 [exp]	1.0	0.9574
AT4G31470			CAP (Cysteine-rich secretory p...		Lus10005557 [exp]	2.8	0.9503
AT4G13260		YUC2	YUCCA2, Flavin-binding monooxy...		Lus10011093 [exp]	5.0	0.9274
AT4G12690			Plant protein of unknown funct...		Lus10036872 [exp]	6.3	0.9429
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10039573 [exp]	6.9	0.9063
AT3G27580		D6PKL3, ATPK7	D6 PROTEIN KINASE LIKE 3, Prot...		Lus10022272 [exp]	7.4	0.8909
AT4G12690			Plant protein of unknown funct...		Lus10006223 [exp]	7.7	0.9433
AT2G28630		KCS12	3-ketoacyl-CoA synthase 12 (.1...		Lus10004918 [exp]	9.2	0.8877
AT4G02290		ATGH9B13	glycosyl hydrolase 9B13 (.1)		Lus10010307 [exp]	9.2	0.8905
AT2G16850		PIP3B, PIP2;8	PLASMA MEMBRANE INTRINSIC PROT...		Lus10027467 [exp]	9.5	0.9039

Compare expression of checked genes

Lus10012742 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.