Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03495 124 / 8e-32 HXXXD-type acyl-transferase family protein (.1) AT1G03940 120 / 1e-30 HXXXD-type acyl-transferase family protein (.1) AT3G29670 104 / 7e-25 PMAT2 phenolic glucoside malonyltransferase 2, HXXXD-type acyl-transferase family protein (.1) AT3G29635 89 / 2e-19 HXXXD-type acyl-transferase family protein (.1) AT5G39080 87 / 7e-19 HXXXD-type acyl-transferase family protein (.1) AT5G61160 85 / 6e-18 AACT1 anthocyanin 5-aromatic acyltransferase 1 (.1) AT5G39090 78 / 1e-15 HXXXD-type acyl-transferase family protein (.1) AT3G29680 76 / 4e-15 HXXXD-type acyl-transferase family protein (.1) AT3G29590 72 / 9e-14 AT5MAT HXXXD-type acyl-transferase family protein (.1) AT5G38130 62 / 2e-10 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039746 [exp] 187 / 3e-55 AT1G03940 304 / 8e-99 HXXXD-type acyl-transferase family protein (.1) Lus10039745 [exp] 155 / 3e-43 AT1G03940 297 / 1e-95 HXXXD-type acyl-transferase family protein (.1) Lus10031587 [exp] 134 / 2e-35 AT1G03495 305 / 7e-99 HXXXD-type acyl-transferase family protein (.1) Lus10020714 [exp] 133 / 6e-35 AT1G03495 337 / 1e-111 HXXXD-type acyl-transferase family protein (.1) Lus10033754 [exp] 129 / 2e-33 AT1G03495 299 / 1e-96 HXXXD-type acyl-transferase family protein (.1) Lus10018507 [exp] 123 / 6e-31 AT1G03495 286 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Lus10020514 [exp] 94 / 4e-21 AT3G29590 296 / 9e-96 HXXXD-type acyl-transferase family protein (.1) Lus10005362 [exp] 89 / 2e-19 AT3G29635 292 / 4e-94 HXXXD-type acyl-transferase family protein (.1) Lus10033599 [exp] 87 / 1e-18 AT3G29635 307 / 1e-99 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G118000 [exp] 135 / 8e-36 AT1G03940 328 / 6e-108 HXXXD-type acyl-transferase family protein (.1) Potri.009G063500 [exp] 130 / 4e-34 AT1G03940 280 / 4e-89 HXXXD-type acyl-transferase family protein (.1) Potri.019G118101 [exp] 126 / 1e-32 AT1G03940 339 / 2e-112 HXXXD-type acyl-transferase family protein (.1) Potri.004G103100 [exp] 96 / 1e-21 AT5G39050 366 / 1e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103200 [exp] 94 / 6e-21 AT5G39050 374 / 1e-125 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G103300 [exp] 90 / 1e-19 AT5G39050 352 / 3e-117 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.010G208100 [exp] 89 / 2e-19 AT5G39050 332 / 3e-109 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110400 [exp] 85 / 4e-18 AT5G39050 363 / 2e-121 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110640 [exp] 84 / 8e-18 AT5G39050 365 / 2e-122 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1) Potri.004G110700 [exp] 84 / 9e-18 AT5G39050 369 / 1e-123 phenolic glucoside malonyltransferase 1, HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10012743 pacid=23148170 polypeptide=Lus10012743 locus=Lus10012743.g ID=Lus10012743.BGIv1.0 annot-version=v1.0 ATGTCTCAATATTCCTCCGCCGTCAAAACCGTCGCCGAACTACAAATCTCCCCACCTCCAGGCTTCGTTCCTCCAAACCCCCTCCCCCTAACTTTCTTCG ACATCAAATTCCTCTATTTCGGCCCGGTGCCGCGAATTCTCTTCTACGATTTCCCCAACCCCGCTTCAGATTTCCACTCAATCGTCGTCCCGAAACTCAC CGCCTCACTCTCCGTCGCTCTCGGCCATTTCCACCCCTTCGTCGGCAGAATCACCGTCCCTCCCCCGCCGGGAAAGCCCCACATCATTTACCCTGCAGAC GGATGCTCTGTTCCTTTCACCGTTGCAGAGTCCACCAATCTCGACTTCCACATCTCCGACCAAATAAACGACGTGGCATTGTTTGAACCTCTTTTCCCCG CTCCGCCGAATTCTTCCGACTCCGAGGGCGACGTCGTGATGTCACCGCTCCTTGCCTTGAAAATCACTCTGTTCCCGGGCTCCGGCTTCTCCATCGCATC CGCTTACAACCACGCGACCAGCGACGGGATGACATTTAACAAATTCATGAAAGCATGGGCGTCAATTTCCAAGTCCTGCGACCACCAAAATTGGCTCGGT AATAATTCGCCGCCGTGCTACGACGTCAGAGCATCTATCAAGGACGAGAAGAACGTCGAGGAAGCATACTTGGAGGAAGCCTGGAAAATAATCACCTCGC CGGCGGTGAAATCCGCCTCAAGTAAATTCTCCTCCGGTAAGTTCCGCGGCACATTTCTCATCGACGGCGCCACAATTTCAAAATTGAAATCCTCTCTTCA TTTCCCGGCGTCGGATTTTGTGGTCGCAAGCGCCCTGATTTGGACGAGCTTGTGCAAATCCTTTGATACCCATTCCGACAAAACCGATCAAGCTCAACCA CCGATCATCGACAGCTTCGGGTTTGTGGCGGATTGTCGGCGGTTGCTTAACCCGNNNNNTTGCTTAACCCGCCGCTGCCGGAGACCTATTTCGGGAACTG TTTGTCCGGCGTGA
AA sequence Show only first row Show all	>Lus10012743 pacid=23148170 polypeptide=Lus10012743 locus=Lus10012743.g ID=Lus10012743.BGIv1.0 annot-version=v1.0 MSQYSSAVKTVAELQISPPPGFVPPNPLPLTFFDIKFLYFGPVPRILFYDFPNPASDFHSIVVPKLTASLSVALGHFHPFVGRITVPPPPGKPHIIYPAD GCSVPFTVAESTNLDFHISDQINDVALFEPLFPAPPNSSDSEGDVVMSPLLALKITLFPGSGFSIASAYNHATSDGMTFNKFMKAWASISKSCDHQNWLG NNSPPCYDVRASIKDEKNVEEAYLEEAWKIITSPAVKSASSKFSSGKFRGTFLIDGATISKLKSSLHFPASDFVVASALIWTSLCKSFDTHSDKTDQAQP PIIDSFGFVADCRRLLNPXXCLTRRCRRPISGTVCPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03940			HXXXD-type acyl-transferase fa...		Lus10012743 [exp]	0	1
AT3G02645			Plant protein of unknown funct...		Lus10023185 [exp]	4.7	0.9223
AT2G27410	B3		Domain of unknown function (DU...		Lus10027284 [exp]	5.0	0.9543
AT5G48140			Pectin lyase-like superfamily ...		Lus10013780 [exp]	6.7	0.9430
AT1G11340			S-locus lectin protein kinase ...		Lus10036139 [exp]	7.3	0.9524
AT1G67623			F-box family protein (.1)		Lus10006434 [exp]	9.3	0.9507
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10029280 [exp]	12.0	0.9390
AT1G57790			F-box family protein (.1)		Lus10004476 [exp]	12.0	0.9429
					Lus10023536 [exp]	12.9	0.8061
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10029872 [exp]	13.7	0.9430
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Lus10009824 [exp]	16.8	0.9001

Compare expression of checked genes

Lus10012743 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.