Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33565 154 / 1e-43 RING/U-box superfamily protein (.1) AT1G72220 143 / 3e-39 RING/U-box superfamily protein (.1) AT5G10380 131 / 6e-36 ATRING1, RING1 RING/U-box superfamily protein (.1) AT3G03550 128 / 3e-34 RING/U-box superfamily protein (.1) AT5G17600 128 / 4e-34 RING/U-box superfamily protein (.1) AT4G17905 106 / 3e-26 ATL4H RING/U-box superfamily protein (.1) AT1G72200 102 / 3e-24 RING/U-box superfamily protein (.1) AT5G05810 100 / 5e-24 ATL43 RING/U-box superfamily protein (.1) AT2G18650 100 / 2e-23 MEE16 maternal effect embryo arrest 16, RING/U-box superfamily protein (.1) AT2G20030 99 / 4e-23 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015901 [exp] 141 / 3e-39 AT1G72220 175 / 3e-51 RING/U-box superfamily protein (.1) Lus10013618 [exp] 119 / 2e-31 AT5G17600 220 / 1e-69 RING/U-box superfamily protein (.1) Lus10037264 [exp] 105 / 1e-25 AT3G03550 144 / 3e-40 RING/U-box superfamily protein (.1) Lus10035677 [exp] 103 / 7e-25 AT3G03550 150 / 5e-42 RING/U-box superfamily protein (.1) Lus10023617 [exp] 99 / 3e-23 AT5G05810 219 / 1e-68 RING/U-box superfamily protein (.1) Lus10012975 [exp] 98 / 8e-23 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10034953 [exp] 97 / 2e-22 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10015502 [exp] 97 / 2e-22 AT4G30400 251 / 1e-79 RING/U-box superfamily protein (.1) Lus10032161 [exp] 95 / 1e-21 AT5G40250 413 / 7e-144 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G111900 [exp] 175 / 9e-52 AT4G33565 163 / 1e-46 RING/U-box superfamily protein (.1) Potri.017G049300 [exp] 169 / 2e-49 AT4G33565 166 / 6e-48 RING/U-box superfamily protein (.1) Potri.007G097500 [exp] 157 / 6e-45 AT5G10380 145 / 2e-40 RING/U-box superfamily protein (.1) Potri.005G071300 [exp] 155 / 8e-44 AT5G10380 135 / 1e-36 RING/U-box superfamily protein (.1) Potri.002G101800 [exp] 153 / 3e-43 AT1G72220 195 / 3e-58 RING/U-box superfamily protein (.1) Potri.001G141200 [exp] 144 / 4e-40 AT5G17600 207 / 1e-63 RING/U-box superfamily protein (.1) Potri.003G093100 [exp] 138 / 6e-38 AT5G17600 196 / 1e-59 RING/U-box superfamily protein (.1) Potri.013G073500 [exp] 123 / 2e-32 AT3G03550 262 / 2e-85 RING/U-box superfamily protein (.1) Potri.019G043900 [exp] 117 / 5e-31 AT3G03550 223 / 3e-71 RING/U-box superfamily protein (.1) Potri.006G176700 [exp] 104 / 9e-25 AT4G30400 304 / 3e-98 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10012745 pacid=23148190 polypeptide=Lus10012745 locus=Lus10012745.g ID=Lus10012745.BGIv1.0 annot-version=v1.0 ATGGCCGTCGTGGCTTCAATCATCGGCGTCGTCTTGCTTGTCCTTGTTCTCTTTCTACTCATCAGAATCTTCAGATCCAGGCGGCGGAGGAGGAGTTTGA GTTTGAGCAGCTGGCGGCGGGATGAGGATCTCATTACCACCGTCGATGCTTTCGCCATCGACGGTGATCGCGAGCCGGTGATTGACCACCCGATCTGGTA TATACGAACAATCGGTCTTGATCAGTCGGTGATCGAATCGATTACGGTGTTTCGGTACGATAAATCGGATAAGTTAATCGACGGAACTGATTGCTCCGTC TGCTTGAGCGAGTTTGAACAAGACGAAACCCTAAGATTGCTCCCTAAGTGCAGCCACGCGTTCCACATCCCTTGCATCGATACTTGGCTTCGATCTCACA CCAATTGCCCTCTCTGCCGCGCTCCGATCATATCTACCGCTGCAGTAGTTGCTGGATCATCGCAGGAAGAAGAAGAATCGCATATAGAGAATTCCGACGA AATTAGCAGCACCAGCAGCCAAACAGCCTCAGAGGAAACCAACGGATCAGCAAGTAGCAGTAGTAGAAGCAATGAAGAAGTGGAGTTTTCAGAATTGCCG AAGCCATTGACGGTAGGAGTGAGGAATCATTCTCATTCTAGGGTTCAGAGCGATGTATTGGAAGGAGGGAGACAACAAGGCGAATTGCAGGCGGTGAGGA GATCGGTGTCGTTGGATTCATCTTCAGCGATGGCGATCTATAGCTTTGTGGCGAATATGGGGAAGAATCTGGATATCTCGTCAAGAGAAATGAAGCGAAG CAATTCGTTGAAAAGAGGGAGTTTGAGCTTCAGGAAACTGATAAAGAGTGGATCAATGGCGGGTTTGTTGAAGAAGGAGCCTGTTTCGATGAAAAGGTCA GTTTCTTCGTCTGGTAAAGCTTCTACTTCTAGACATGTCAGCAGAAGTCATGACTCCATCCTTCCCTTGTAA
AA sequence Show only first row Show all	>Lus10012745 pacid=23148190 polypeptide=Lus10012745 locus=Lus10012745.g ID=Lus10012745.BGIv1.0 annot-version=v1.0 MAVVASIIGVVLLVLVLFLLIRIFRSRRRRRSLSLSSWRRDEDLITTVDAFAIDGDREPVIDHPIWYIRTIGLDQSVIESITVFRYDKSDKLIDGTDCSV CLSEFEQDETLRLLPKCSHAFHIPCIDTWLRSHTNCPLCRAPIISTAAVVAGSSQEEEESHIENSDEISSTSSQTASEETNGSASSSSRSNEEVEFSELP KPLTVGVRNHSHSRVQSDVLEGGRQQGELQAVRRSVSLDSSSAMAIYSFVANMGKNLDISSREMKRSNSLKRGSLSFRKLIKSGSMAGLLKKEPVSMKRS VSSSGKASTSRHVSRSHDSILPL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G33565			RING/U-box superfamily protein...		Lus10012745 [exp]	0	1
AT1G64140			unknown protein		Lus10024712 [exp]	1.4	0.9178
AT1G07710			Ankyrin repeat family protein ...		Lus10024440 [exp]	2.0	0.9141
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Lus10036378 [exp]	3.0	0.9142
AT4G32020			unknown protein		Lus10005344 [exp]	3.2	0.9183
AT2G45630			D-isomer specific 2-hydroxyaci...		Lus10041393 [exp]	4.2	0.8908
AT2G27260			Late embryogenesis abundant (L...		Lus10013329 [exp]	5.0	0.9056
AT3G48560		TZP5, IMR1, ALS...	TRIAZOLOPYRIMIDINE RESISTANT 5...		Lus10035359 [exp]	5.5	0.8848
AT3G56880			VQ motif-containing protein (....		Lus10012292 [exp]	6.3	0.8741
AT5G60570			Galactose oxidase/kelch repeat...		Lus10037413 [exp]	6.9	0.8921
AT5G47120		ATBI-1, ATBI1	ARABIDOPSIS BAX INHIBITOR 1, B...		Lus10000589 [exp]	7.0	0.8922

Compare expression of checked genes

Lus10012745 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.