Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G46550 45 / 6e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023163 [exp] 250 / 1e-85 AT2G46550 60 / 5e-11 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G097400 [exp] 87 / 3e-21 AT2G46550 66 / 5e-13 unknown protein Potri.005G071400 [exp] 82 / 1e-19 AT2G46550 80 / 5e-18 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012748 pacid=23148155 polypeptide=Lus10012748 locus=Lus10012748.g ID=Lus10012748.BGIv1.0 annot-version=v1.0 ATGGCCGGATCGGCATCCAGCCACCCCAAGTTGAAATCCAGAGTCCCTAAACTGAACGACCCATTGATGTCCTGTTTGATGCAGAACTGTGATCTCCCTC CGCCTTCAAAGCTCTACTATGGGTCCGGCGAGCTCATCGTTTCATCTACCAGCCGTGTTTTCGCACTGATGATGCAACAAGACAACGACCACGGCCACAA AGACGAAAAGGTGGAAGGGTACGAAACGGGTGGTAAGAAGTTGGACCTGCTGAAAGCGGTGAGGCTCTCGCAGACGAGGGCAAGAGAAGCCGAGAAGAGA GCAGAGAGTCTATCCTATGCCCTGTCGGCAGAGTCACTCCAGCTCTTTGCGTATCGGCAGTGGTCGAAGCTGCTTGAGGCTCGAATTCTCAAGCTCGAAG CAGAGTTAGCAGAATCAGGAGCGGCAGAGAGGAGAGATGGAGTAGAGCCATGCTTACCGTGGACGCTGGCTCTGGCTTTTTGTCTAGGTATTGCAGGGGC AGGCATTGTAGTAATTGGTTTTAGGTACTGGTTTTGA
AA sequence Show only first row Show all	>Lus10012748 pacid=23148155 polypeptide=Lus10012748 locus=Lus10012748.g ID=Lus10012748.BGIv1.0 annot-version=v1.0 MAGSASSHPKLKSRVPKLNDPLMSCLMQNCDLPPPSKLYYGSGELIVSSTSRVFALMMQQDNDHGHKDEKVEGYETGGKKLDLLKAVRLSQTRAREAEKR AESLSYALSAESLQLFAYRQWSKLLEARILKLEAELAESGAAERRDGVEPCLPWTLALAFCLGIAGAGIVVIGFRYWF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46550			unknown protein		Lus10012748 [exp]	0	1
AT5G18980			ARM repeat superfamily protein...		Lus10034018 [exp]	2.0	0.9329
AT2G01300			unknown protein		Lus10002277 [exp]	2.0	0.9068
AT3G14250			RING/U-box superfamily protein...		Lus10024093 [exp]	4.0	0.9324
AT4G17830			Peptidase M20/M25/M40 family p...		Lus10040090 [exp]	5.0	0.9063
AT1G20180			Protein of unknown function (D...		Lus10017286 [exp]	6.3	0.8800
AT2G14095			unknown protein		Lus10035649 [exp]	6.7	0.9097
AT5G14280	GeBP		DNA-binding storekeeper protei...		Lus10036981 [exp]	7.2	0.8645
AT5G18980			ARM repeat superfamily protein...		Lus10001111 [exp]	8.5	0.8814
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Lus10034437 [exp]	10.1	0.8465
AT1G53210			sodium/calcium exchanger famil...		Lus10033629 [exp]	10.9	0.8849

Compare expression of checked genes

Lus10012748 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.