Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10370 202 / 5e-58 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1) AT4G01020 200 / 3e-57 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1) AT3G27720 50 / 2e-06 ATARI4, ARI4, ATARI14 ARABIDOPSIS ARIADNE 4, ARIADNE 4, IBR domain containing protein (.1) AT4G34370 46 / 3e-05 ATARI1 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) AT2G31770 44 / 9e-05 ATARI9, ARI9 ARABIDOPSIS ARIADNE 9, ARIADNE 9, RING/U-box superfamily protein (.1) AT3G27710 44 / 0.0001 ARARI3, ATARI13 ARABIDOPSIS ARIADNE 3, RING/U-box superfamily protein (.1) AT2G31760 44 / 0.0001 ATARI10, ARI10 ARABIDOPSIS ARIADNE 10, ARIADNE 10, RING/U-box superfamily protein (.1) AT3G14250 43 / 0.0002 RING/U-box superfamily protein (.1) AT2G16090 42 / 0.0008 ATARI2, ARI2, ATARI12 ARABIDOPSIS ARIADNE 2, ARIADNE 2, RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023162 [exp] 360 / 4e-30 AT5G10370 1876 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1) Lus10013371 [exp] 45 / 4e-05 AT2G31510 441 / 2e-150 ARABIDOPSIS ARIADNE 7, ARIADNE 7, IBR domain-containing protein (.1) Lus10026319 [exp] 44 / 0.0002 AT2G16090 788 / 0.0 ARABIDOPSIS ARIADNE 2, ARIADNE 2, RING/U-box superfamily protein (.1) Lus10042348 [exp] 44 / 0.0002 AT4G34370 827 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G071500 [exp] 245 / 9e-73 AT5G10370 1979 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1) Potri.017G050100 [exp] 228 / 5e-67 AT4G01020 1719 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1) Potri.001G310200 [exp] 78 / 6e-18 AT4G01020 81 / 1e-19 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1) Potri.T124304 [exp] 47 / 1e-05 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2) Potri.009G111200 [exp] 47 / 1e-05 AT4G34370 835 / 0.0 ARABIDOPSIS ARIADNE 1, ARIADNE 1, RING/U-box superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012749 pacid=23148197 polypeptide=Lus10012749 locus=Lus10012749.g ID=Lus10012749.BGIv1.0 annot-version=v1.0 ATGAAGTGTCAGCAGTTGTTTCACAGCTCATTGACCTGCTGTCCATCTGTTTATTTTGCAATCGAGAAGCAACTGGATTCTTTGCTGGAAAGTTTCAGAG CTCGGGATGCTGTGGTGCTATCACTCTCAGGTGTTACATGCACAACAGAGAAGCTTACCCACGGTTCATGGCGAGTTAAAATTTCCGCCAACGCTACAAA GACTGTTGCAGAGCTTAGAAGACCTCTGGAAGAAGTGATGAGAGGAAGGATAATAAATCACGACAGCCTAAGTCAAACAGTACTACAGCTTCTATTCACC CCTCACGGCGTGAACTTGATGCGAGAAATACAGCAGCAGACTCGAACCTACATTCTCTTCGACCGGCGTAACTTCAATGTGAGAATCTTCGGATCTTCAA GTAACATAACTGTAGCCGGGAGGAAACTGATCGAATCTCTTCTGGCCTACCATGAGAGCCGACAGTTCCAGATTCATATGAAAGGTGGCGGCCTATCTCC AGACTTGATGAAGCGAGTCGTCGAGAAGTTCGGTGCAGACCTCAAGGGGTTGAAATCGATGTTCCGGGAAGCGGAATTCGCGTTGGACACGAGACATCAC GTCATTTCCGTTCATGGTAATATAGATGTCAAGAAAAGAGTGGAAGAAGTTGTCAAAAAGTCGCGAGCGATCAATACTCTACCACAGAGCAGGTTTCGAG CGATCTATCCTGTCCGATCTGCTTGTGTGAAGTCGAGAAGGGATACCGACTCGAATCCTGCTCGCATTTATTCTGCCAGCCGTGATGCCGATATACCTCA CGGATTTGAGATCCTTCTTATCGGTCGAGAAATTGGAAGAACTGTTCCAAACGAATTTCTCACCTACAAAGAACATGTGAAGACTTGCCCGGTTTGTTTC TTCACGATCGAGAAGGTCAATGGGTGTAATCACGTGGAGTGCCATTGCGGAAGGCATATTTGTTGGGTTTGCTTAGAGCATTTTGATAGCAGCCAAGAGT GCTATGCCCATATCCAGACGATGCTGCATGTCTGA
AA sequence Show only first row Show all	>Lus10012749 pacid=23148197 polypeptide=Lus10012749 locus=Lus10012749.g ID=Lus10012749.BGIv1.0 annot-version=v1.0 MKCQQLFHSSLTCCPSVYFAIEKQLDSLLESFRARDAVVLSLSGVTCTTEKLTHGSWRVKISANATKTVAELRRPLEEVMRGRIINHDSLSQTVLQLLFT PHGVNLMREIQQQTRTYILFDRRNFNVRIFGSSSNITVAGRKLIESLLAYHESRQFQIHMKGGGLSPDLMKRVVEKFGADLKGLKSMFREAEFALDTRHH VISVHGNIDVKKRVEEVVKKSRAINTLPQSRFRAIYPVRSACVKSRRDTDSNPARIYSASRDADIPHGFEILLIGREIGRTVPNEFLTYKEHVKTCPVCF FTIEKVNGCNHVECHCGRHICWVCLEHFDSSQECYAHIQTMLHV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10370			helicase domain-containing pro...		Lus10012749 [exp]	0	1
AT3G14820			GDSL-like Lipase/Acylhydrolase...		Lus10014257 [exp]	1.0	0.7850
AT5G41620			unknown protein		Lus10003027 [exp]	4.6	0.7236
AT4G03630			RNI-like superfamily protein (...		Lus10008704 [exp]	5.5	0.6852
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10036897 [exp]	7.6	0.7460
AT1G16860			Ubiquitin-specific protease fa...		Lus10005996 [exp]	8.4	0.6592
AT1G22950			2-oxoglutarate (2OG) and Fe(II...		Lus10000171 [exp]	9.2	0.7174
AT5G46920			Intron maturase, type II famil...		Lus10003019 [exp]	17.0	0.6994
AT5G10080			Eukaryotic aspartyl protease f...		Lus10019678 [exp]	17.5	0.6846
AT5G42140			Regulator of chromosome conden...		Lus10029772 [exp]	19.3	0.6109
AT3G12550		FDM3	factor of DNA methylation 3, X...		Lus10000950 [exp]	23.7	0.6527

Compare expression of checked genes

Lus10012749 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.