Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G01020 248 / 4e-69 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1) AT5G10370 238 / 8e-66 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1) AT3G26560 87 / 2e-17 ATP-dependent RNA helicase, putative (.1) AT1G32490 84 / 3e-16 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) AT2G35340 83 / 4e-16 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1) AT4G16680 81 / 1e-15 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G13010 81 / 2e-15 EMB3011 embryo defective 3011, RNA helicase family protein (.1) AT2G01130 71 / 2e-12 DEA(D/H)-box RNA helicase family protein (.1) AT1G58060 71 / 2e-12 RNA helicase family protein (.1) AT2G30800 69 / 1e-11 ATVT-1, HVT1 helicase in vascular tissue and tapetum (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023162 [exp] 615 / 0 AT5G10370 1876 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1) Lus10036783 [exp] 86 / 7e-17 AT3G26560 1790 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10037145 [exp] 86 / 7e-17 AT3G26560 1529 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10031647 [exp] 81 / 3e-15 AT1G32490 1545 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10033690 [exp] 81 / 4e-15 AT1G32490 1399 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Lus10027147 [exp] 79 / 5e-15 AT3G26560 555 / 0.0 ATP-dependent RNA helicase, putative (.1) Lus10009660 [exp] 71 / 3e-12 AT2G35920 969 / 0.0 RNA helicase family protein (.1) Lus10009022 [exp] 71 / 4e-12 AT2G35920 1447 / 0.0 RNA helicase family protein (.1) Lus10013479 [exp] 70 / 6e-12 AT2G01130 1570 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G071500 [exp] 288 / 8e-83 AT5G10370 1979 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1) Potri.017G050100 [exp] 204 / 1e-54 AT4G01020 1719 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1) Potri.015G024400 [exp] 86 / 6e-17 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.015G008700 [exp] 86 / 8e-17 AT1G32490 1541 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2) Potri.012G034200 [exp] 85 / 1e-16 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1) Potri.010G172500 [exp] 84 / 2e-16 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1) Potri.016G068900 [exp] 73 / 6e-13 AT2G35920 1474 / 0.0 RNA helicase family protein (.1) Potri.010G246000 [exp] 72 / 1e-12 AT5G04895 1862 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.004G222900 [exp] 72 / 2e-12 AT1G58060 1757 / 0.0 RNA helicase family protein (.1) Potri.008G014100 [exp] 70 / 5e-12 AT5G04895 1835 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10012750 pacid=23148183 polypeptide=Lus10012750 locus=Lus10012750.g ID=Lus10012750.BGIv1.0 annot-version=v1.0 ATGAGTCGCCCGTACGAGGCCGCTTTCCGACGGTCTCAGCCGCCGGGGAACTACTCAGGCCAACCCCGGCCTCCTTTTCCTCACAACTACCACAACCACA ACCAACAGCAACAACAAAAACCCTGCACCTTCAACAGAAACTCCAACCACAACAATCCCGGCGCCAACTGCCAGTCTCCCCGCCGTGACGCCGGAACCCC TGCCACTCGCATCCGTCCGAACTTCGTGATCAGGCTTCTGGTCGACCGAGCTGACGGCGGCGAGTCACGCATGACTCCCGACACGGCCGCTCTCATTTCG GAATGCGCTCCTGATGCCAGTCGCATTGTCTTCTCCTCGAGCGCCACCGTGGCTGCTACTCTCTACTTCTGCGAGTGGGGGCAGGCTCGCTCCACGATGA CGAAGCTGTGGGATCGCCGTCTGAAGGGCGATCACTGCTTAAACCCTTGCCTCGAGAGCTTCGTGATGGTTCCTTCTGACTCCGAGGAGCTAAGGCGTGA CCTCGGGGCGATTTTCGCTGACTACGTTCGTGGTGTGATCGGCGGAGGAAAGGTCGTTCGGGAGTTGAATTCGAAGGTGGACGGGAAGCGTCGTGAACTT GAAGAGGTTTTGAAGCAGTTGAGGGCGAAGAGGGGGAATCGGTTAGATGCTTTCGCGCAATTGAATGTCAGGAAGAAGTTCTTGGTGTCGGAGGTTGAGT TGATGAAGAAGAGACTGGGGGAGTTTAAGGCGGCGATGAGGTGTGTTTTGAAGTATACTGGTGGCGGGAACTTGGAGGAGGAAGAAGATGAAGGAGCGGT GGATGTAGTAGAGCCCTTGGTGCTGGAAGGTGAAGTCGATTGGGTAAAGATTCATAGGGTTATTCTCAGGGAGATTCGAAGGCTGCAGGATGGACTTCCC ATTTACGCTCACCGGAGGGAAATTCTGGCCAGAATTAGGGATTCGCAGATCATGGTTTTGATTGGGGAGACTGGTTCTGGAAAGAGCACACAGTTGGTTC AGTTCCTGGCCGATTCTGGCATTGGATCAAGTGATTCTGTTATGTGTACACAGCCTCGGAAGATTGCTGCCATGTCAATTGCTGATAGAGTCAAAGGAGA GTCTCGTGGCTGCTACAAAGACAATTCTGTTGTCTCTTATCCAACCTTTTCATCCAACCAAGAGTTTGATGGAGTGTCAGAAGCTAAAGTTCAAGCGACT GACTGGCTTCGGAAGTCTCCTTCTCAAAAGGTTTTGTGGGAAGTACAAAAGCAATTTGCAGTCTTTCGTGAAATCTTGAATGAGATTCAGCTATTTGCTA CTACAGAAAGTATGGAGAAGCTGTCTGGTCTTGTAGAGGAAGCTGTGGAGTATGAGCGGAAAGCATTACGCAATGAATGCATGGAGAGACATCTCTACCA TGGAGTTAGCTTTTCATCTTCTGTTGCACTTTTTGGAGCTGGTGCTGTGATCAAGCATTTGGAGCTTCTGAAAAGATATCTTACTGTTGAGATATTTCTT TCTGTGGATTTGGTTGATAATGATAAGGAGCTTTTGATGTTTGTTGAGGATTTCACTTCTGGTACTATTTGTTCAATCCACAAGTTCTTCAATGCCCAAA GAGGTGGTGAGAATCACAAGTGGGGAAAGATAACCTTCCTTTCCCCAGAAGCTGCTGATAAGGCATGCCAGCTTGACGGAGTTGAATTCCATGGATCCAT CCTGAAAGTGACTCCTACACAAACAAGCTTCGGGTCTGATCACACACCATTTTCTTTCCCAGCTGTTAGCGCAAAGGTTTATTGGCCTCGTAGGTACAGT ACAGGCACTGCAATTGTTAGATGCTACAATGCAGATGATGCTACATTTCTGGTTGAGGACTTCTCTCAACTAGTAATCGGAGAGAAGTACGTCCGGTCTT CAAGAAGCAGACAACGTGATGACTGCGTTGTTTTATATGGGATTGATAAAGCGCTTTATGAAGGTGATATTAAAGACTCAGTCATTACTGCTGCAGGGAG GCAAATTCAAGATTTTTTCTGTTGTGGGGTGATGCTTTGCCAGATCTTGCACCTAGTGTTTGTGAAGAAGCACTTATGTGAGAGATCACTCCTTTCATGT CTAAACAAAATCCAAATACTAGCAATTGCAGAGTCCAAGTTTTTCCTCCTGGACCCAAAGATGCTTATAGGAGAACTGAAATTATCTTTGATGGGAGATT GCATCTGGAGGCTCTAA
AA sequence Show only first row Show all	>Lus10012750 pacid=23148183 polypeptide=Lus10012750 locus=Lus10012750.g ID=Lus10012750.BGIv1.0 annot-version=v1.0 MSRPYEAAFRRSQPPGNYSGQPRPPFPHNYHNHNQQQQQKPCTFNRNSNHNNPGANCQSPRRDAGTPATRIRPNFVIRLLVDRADGGESRMTPDTAALIS ECAPDASRIVFSSSATVAATLYFCEWGQARSTMTKLWDRRLKGDHCLNPCLESFVMVPSDSEELRRDLGAIFADYVRGVIGGGKVVRELNSKVDGKRREL EEVLKQLRAKRGNRLDAFAQLNVRKKFLVSEVELMKKRLGEFKAAMRCVLKYTGGGNLEEEEDEGAVDVVEPLVLEGEVDWVKIHRVILREIRRLQDGLP IYAHRREILARIRDSQIMVLIGETGSGKSTQLVQFLADSGIGSSDSVMCTQPRKIAAMSIADRVKGESRGCYKDNSVVSYPTFSSNQEFDGVSEAKVQAT DWLRKSPSQKVLWEVQKQFAVFREILNEIQLFATTESMEKLSGLVEEAVEYERKALRNECMERHLYHGVSFSSSVALFGAGAVIKHLELLKRYLTVEIFL SVDLVDNDKELLMFVEDFTSGTICSIHKFFNAQRGGENHKWGKITFLSPEAADKACQLDGVEFHGSILKVTPTQTSFGSDHTPFSFPAVSAKVYWPRRYS TGTAIVRCYNADDATFLVEDFSQLVIGEKYVRSSRSRQRDDCVVLYGIDKALYEGDIKDSVITAAGRQIQDFFCCGVMLCQILHLVFVKKHLCERSLLSC LNKIQILAIAESKFFLLDPKMLIGELKLSLMGDCIWRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10370			helicase domain-containing pro...		Lus10012750 [exp]	0	1
AT1G65440		GTB1	global transcription factor gr...		Lus10011344 [exp]	16.3	0.8227
AT5G46070			Guanylate-binding family prote...		Lus10015390 [exp]	18.7	0.8091
AT5G46070			Guanylate-binding family prote...		Lus10013965 [exp]	19.0	0.8181
AT3G47570			Leucine-rich repeat protein ki...		Lus10038598 [exp]	22.2	0.8099
AT4G03220			Protein with RNI-like/FBD-like...		Lus10006970 [exp]	39.9	0.7939
AT1G36990			unknown protein		Lus10042697 [exp]	49.0	0.8110
AT4G11450			Protein of unknown function (D...		Lus10035493 [exp]	52.7	0.7993
AT3G08960			ARM repeat superfamily protein...		Lus10008367 [exp]	60.8	0.7275
AT4G15410		PUX5, ATB' GAMM...	serine/threonine protein phosp...		Lus10030005 [exp]	64.0	0.7863
AT2G44830			Protein kinase superfamily pro...		Lus10042912 [exp]	66.0	0.7879

Compare expression of checked genes

Lus10012750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.