Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64300 751 / 0 ATGCH, ATRIBA1, RFD1 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) AT2G22450 631 / 0 riboflavin biosynthesis protein, putative (.1) AT5G59750 597 / 0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023161 [exp] 994 / 0 AT5G64300 744 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10035929 [exp] 855 / 0 AT5G64300 763 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10025733 [exp] 847 / 0 AT5G64300 757 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10040865 [exp] 588 / 0 AT5G59750 714 / 0.0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2) Lus10006669 [exp] 519 / 0 AT5G64300 513 / 5e-179 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10007013 [exp] 516 / 4e-178 AT5G64300 506 / 4e-174 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Lus10005882 [exp] 429 / 2e-146 AT5G59750 502 / 2e-175 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G097300 [exp] 802 / 0 AT5G64300 773 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.001G310500 [exp] 764 / 0 AT5G64300 764 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.017G050400 [exp] 727 / 0 AT5G64300 714 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.005G071600 [exp] 706 / 0 AT5G64300 647 / 0.0 RED FLUORESCENT IN DARKNESS 1, Arabidopsis thaliana riboflavin A1, ARABIDOPSIS THALIANA GTP CYCLOHYDROLASE II, GTP cyclohydrolase II (.1) Potri.001G234900 [exp] 608 / 0 AT5G59750 770 / 0.0 DHBP synthase RibB-like alpha/beta domain;GTP cyclohydrolase II (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00926 [flax] [poplar] DHBP_synthase 3,4-dihydroxy-2-butanone 4-phosphate synthase PF00925 [flax] [poplar] GTP_cyclohydro2 GTP cyclohydrolase II
Representative CDS sequence Show only first row Show all	>Lus10012751 pacid=23148212 polypeptide=Lus10012751 locus=Lus10012751.g ID=Lus10012751.BGIv1.0 annot-version=v1.0 ATGGCGTCACCAGTTCATTTCCTCACCTCCCCTTTGGCGGCTCCTTCTCGTTTCCAAGGGTACCCTGGAAAGATCGTTTCTTTGGCGGTGAATGGTAACT TTAGTACTACTACTACCGTGTCTTCCTCCTCAAACCCTAGAAAGCTGTACGCTGGTTTCAATGGTGGCAGTAGTAGGTCAGCTAGACTCTGTGTGGTTTC TGGGGAAGGTGACCTCCTTTCTTCACTTGGTGGGATTGAATTGCAGCCTGAGGTTGTGGATTTCGCTACCCTGTCTGCCGAGTTAACTCCCACCAGGTCT GATTTCTTGCCTGATAATGATGAATTCGACTTGGATCGTCCTACCCTAGGGTTCAGCTCCATCCCTGATGCAATTGACGATATCCGCCAAGGCAAGCTTG TGATCGTTGTTGATGATGAAGATAGAGAAAATGAAGGGGACCTGATAATGGCAGCTTCTAAGGCAACACCTGAAGCAATGGCATTCATTGTCAAGCATGG AACTGGGATAGTCTGTGTAAGCATGCAAGGTGAAGATTTAGAGAGACTGCAGCTTCCTTTGATGGTATCAACAAAGGAGAATGAGGAAAAGCTTTCCACT GCCTTTACAGTCTCAGTTGATGCGAAAGTTGGCACCACAACTGGCGTTTCAGCTCGCGACAGGGCAACGACAATATTGGCTCTAGCGTCTAAGGATTCCA AACCAGAAGATTTCAATCGTCCAGGGCATATATTCCCTCTCAAGTATAGAGAGGGAGGTGTTCTGAAGAGAGCCGGTCACACAGAAGCCTCGGTTGATCT CTCGGTGCTTGCTGGATTAGAGCCTGCTGCAGTTTTGTGTGAGATTGTCGACGATGATGGTTCTATGGCGAGACTTCCCAGGCTTCGAGAGTTTGCAAAA GCCGAGAATCTAAAGATCATCTCAATAGCTGATCTCATCAGATTTAGAAGGAAAAGGGACAGACTTGTCGAACTTTCGGCTGCTGCTCGGATACCAACCA TGTGGGGGCCTTTCAAATCCTATTGTTACAGGTCATTGATTGATGGAATTGAGCATATTGCCATGGTTAAAGGTGACATCGGGGAAGGGAAGGATATTCT CGTCCGTGTGCACTCGGAGTGTCTCACAGGCGATATATTCGGCTCAGCGAGATGTGATTGTGGTAATCAGCTAGCACTTGCCATGAAGCAAATCGAAGCA GCTGGGAGAGGGGTGCTGGTGTATCTCCGTGGACACGAAGGTAGAGGTATTGGTTTAGGCCACAAACTCCGTGCATACAACCTGCAAGATGACGGTCGTG ATACAGTCGAAGCAAACGAGGAGCTCGGTCTTCCAGTTGATTCCCGCGAATATGGTATCGGTGCACAGATACTCCGAGATCTAGGCGTCCGAACAATGAA ACTGATGACAAACAATCCGACAAAGTACATTGGCCTCAAAGGATATGGTCTGTCGGTCGCTGGAAGAGTGCCGTTGATTACCCCGATCACAAGTGAGAAC CGGAGGTACCTCGAAACTAAGAGACAGAAGATGGGGCATGTCTATGGTCCTGATTCAACAATCTCTAACGGATCATCAGATGGTCTGTTGGAGGCTTAG
AA sequence Show only first row Show all	>Lus10012751 pacid=23148212 polypeptide=Lus10012751 locus=Lus10012751.g ID=Lus10012751.BGIv1.0 annot-version=v1.0 MASPVHFLTSPLAAPSRFQGYPGKIVSLAVNGNFSTTTTVSSSSNPRKLYAGFNGGSSRSARLCVVSGEGDLLSSLGGIELQPEVVDFATLSAELTPTRS DFLPDNDEFDLDRPTLGFSSIPDAIDDIRQGKLVIVVDDEDRENEGDLIMAASKATPEAMAFIVKHGTGIVCVSMQGEDLERLQLPLMVSTKENEEKLST AFTVSVDAKVGTTTGVSARDRATTILALASKDSKPEDFNRPGHIFPLKYREGGVLKRAGHTEASVDLSVLAGLEPAAVLCEIVDDDGSMARLPRLREFAK AENLKIISIADLIRFRRKRDRLVELSAAARIPTMWGPFKSYCYRSLIDGIEHIAMVKGDIGEGKDILVRVHSECLTGDIFGSARCDCGNQLALAMKQIEA AGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQILRDLGVRTMKLMTNNPTKYIGLKGYGLSVAGRVPLITPITSEN RRYLETKRQKMGHVYGPDSTISNGSSDGLLEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Lus10012751 [exp]	0	1
AT2G19130			S-locus lectin protein kinase ...		Lus10033748 [exp]	1.0	0.7264
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10030368 [exp]	14.9	0.6529
AT4G02610			Aldolase-type TIM barrel famil...		Lus10024848 [exp]	28.3	0.5229
AT1G78440		ATGA2OX1	Arabidopsis thaliana gibberell...		Lus10038498 [exp]	30.3	0.6045
AT5G11670		ATNADP-ME2	Arabidopsis thaliana NADP-mali...		Lus10005483 [exp]	49.5	0.5690
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10029681 [exp]	53.9	0.5026
AT2G18110			Translation elongation factor...		Lus10017261 [exp]	61.2	0.5684
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10042221 [exp]	77.2	0.5587
AT2G15780			Cupredoxin superfamily protein...		Lus10025269 [exp]	86.5	0.5521
AT1G09640			Translation elongation factor ...		Lus10007150 [exp]	89.7	0.5380

Compare expression of checked genes

Lus10012751 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.